Wall clock time and date at job start Sun Mar 29 2020 22:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31784 * 119.08795 * 2 1 4 4 C 1.32549 * 121.01377 * 180.27068 * 3 2 1 5 5 C 1.38125 * 119.19639 * 359.48111 * 4 3 2 6 6 C 1.50695 * 120.83121 * 180.27806 * 5 4 3 7 7 C 1.39624 * 118.33216 * 0.25987 * 5 4 3 8 8 N 1.38543 * 120.53009 * 180.02562 * 7 5 4 9 9 C 1.46497 * 119.99781 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.47476 * 324.99211 * 9 8 7 11 11 C 1.53004 * 109.47203 * 84.99879 * 9 8 7 12 12 C 1.50702 * 109.47102 * 204.99414 * 9 8 7 13 13 H 1.07999 * 119.99821 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00371 * 179.97438 * 12 9 8 15 15 N 1.31522 * 120.00019 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00292 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47216 * 60.00299 * 16 14 12 18 18 H 1.48500 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47169 * 300.00382 * 16 14 12 20 20 N 1.31758 * 119.08036 * 179.75131 * 2 1 3 21 21 H 1.08995 * 109.47153 * 270.25460 * 1 2 3 22 22 H 1.09010 * 109.46983 * 30.25140 * 1 2 3 23 23 H 1.09003 * 109.47567 * 150.24951 * 1 2 3 24 24 H 1.08002 * 120.40586 * 179.76583 * 4 3 2 25 25 H 1.08995 * 109.47695 * 90.00493 * 6 5 4 26 26 H 1.09007 * 109.46718 * 210.00287 * 6 5 4 27 27 H 1.08996 * 109.47419 * 330.00028 * 6 5 4 28 28 H 0.97002 * 119.99757 * 359.97438 * 8 7 5 29 29 H 1.08993 * 109.47257 * 59.99925 * 11 9 8 30 30 H 1.09001 * 109.46668 * 179.97438 * 11 9 8 31 31 H 1.08997 * 109.47016 * 299.99400 * 11 9 8 32 32 H 0.96996 * 120.00033 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1516 0.0000 4 6 3.4724 1.1962 -0.0054 5 6 4.1863 0.0138 -0.0001 6 6 5.6932 0.0215 0.0004 7 6 3.4767 -1.1887 0.0052 8 7 4.1468 -2.4013 0.0111 9 6 3.3906 -3.6560 0.0171 10 1 2.4821 -3.5299 0.6060 11 6 3.0197 -4.0349 -1.4181 12 6 4.2343 -4.7480 0.6228 13 1 5.2336 -4.5292 0.9690 14 6 3.7300 -6.0262 0.7360 15 7 2.5129 -6.2927 0.3148 16 14 4.7755 -7.3797 1.4874 17 1 5.1354 -7.0115 2.8803 18 1 4.0091 -8.6516 1.4934 19 1 6.0133 -7.5520 0.6854 20 7 2.1473 -1.1515 0.0050 21 1 -0.3633 0.0046 1.0276 22 1 -0.3633 0.8878 -0.5178 23 1 -0.3634 -0.8922 -0.5099 24 1 3.9873 2.1455 -0.0091 25 1 6.0563 0.0276 1.0280 26 1 6.0612 -0.8689 -0.5097 27 1 6.0522 0.9111 -0.5171 28 1 5.1167 -2.4194 0.0112 29 1 3.9282 -4.1611 -2.0069 30 1 2.4575 -4.9687 -1.4136 31 1 2.4095 -3.2451 -1.8562 32 1 2.1583 -7.1920 0.3941 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349865800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:13 Heat of formation + Delta-G solvation = 36.068679 kcal Electronic energy + Delta-G solvation = -14879.636917 eV Core-core repulsion = 12453.858952 eV Total energy + Delta-G solvation = -2425.777965 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40666 -36.31060 -33.86998 -33.13428 -31.30497 -29.74850 -28.42501 -25.42297 -25.22554 -23.22081 -21.30682 -20.45442 -17.66210 -16.65896 -16.02229 -14.88131 -14.82484 -14.24427 -13.86626 -13.40560 -13.16380 -12.69437 -12.57956 -12.29652 -12.04419 -11.97099 -11.79500 -11.27922 -11.06643 -10.85556 -10.45417 -10.25036 -10.15461 -10.06073 -9.12223 -8.93094 -8.56982 -8.41118 -7.17033 -6.15565 -4.24921 1.56444 2.04504 3.23183 3.28472 3.29707 3.96283 4.32585 4.41629 4.61618 4.88860 5.16741 5.24500 5.38939 5.55317 5.77443 5.80517 5.90833 6.02457 6.08669 6.31617 6.35480 6.75354 6.92672 7.02341 7.13230 7.40956 7.55107 7.63823 7.84869 8.05162 8.22248 8.51214 8.76712 9.04080 9.41753 10.90227 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035984 B = 0.007731 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.943370 B = 3620.843493 C = 4146.236241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.347 3.653 3 N -0.582 5.582 4 C 0.168 3.832 5 C -0.286 4.286 6 C -0.089 4.089 7 C 0.448 3.552 8 N -0.682 5.682 9 C 0.269 3.731 10 H 0.054 0.946 11 C -0.145 4.145 12 C -0.537 4.537 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.882 5.882 16 Si 0.901 3.099 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 N -0.565 5.565 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.153 0.847 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.400 0.600 29 H 0.023 0.977 30 H 0.090 0.910 31 H 0.015 0.985 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 10.092 -1.054 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 N -0.304 5.304 4 C 0.007 3.993 5 C -0.298 4.298 6 C -0.147 4.147 7 C 0.200 3.800 8 N -0.309 5.309 9 C 0.167 3.833 10 H 0.072 0.928 11 C -0.203 4.203 12 C -0.576 4.576 13 H 0.077 0.923 14 C -0.135 4.135 15 N -0.520 5.520 16 Si 0.729 3.271 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.202 1.202 20 N -0.290 5.290 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.101 0.899 24 H 0.170 0.830 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.236 0.764 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.034 0.966 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.689 9.665 -1.062 9.748 hybrid contribution 1.933 -0.838 0.385 2.142 sum 2.622 8.827 -0.676 9.233 Atomic orbital electron populations 1.20467 0.86708 1.03428 1.03274 1.22831 0.97425 0.83064 0.88896 1.68159 1.09586 1.29983 1.22630 1.22524 0.89555 0.96809 0.90386 1.20843 0.97924 0.94069 1.16941 1.20373 0.90429 1.02185 1.01723 1.18598 0.88389 0.86767 0.86250 1.45605 1.08655 1.03536 1.73073 1.18813 0.92510 0.77970 0.93963 0.92805 1.22076 0.99120 1.01782 0.97371 1.21183 1.01042 0.93812 1.41552 0.92285 1.24857 0.95121 0.98425 0.95128 1.69888 1.15122 1.21223 1.45723 0.86510 0.80114 0.80799 0.79697 1.20185 1.21043 1.20165 1.67943 1.07680 1.30176 1.23228 0.90222 0.90315 0.89918 0.82978 0.91839 0.92103 0.91786 0.76416 0.95795 0.89127 0.96617 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.32 36.00 0.37 -0.79 16 2 C 0.35 6.49 7.64 -157.24 -1.20 5.29 16 3 N -0.58 -10.34 10.33 -10.81 -0.11 -10.45 16 4 C 0.17 2.68 10.99 -17.28 -0.19 2.49 16 5 C -0.29 -4.82 5.93 -104.15 -0.62 -5.44 16 6 C -0.09 -1.16 9.64 36.00 0.35 -0.81 16 7 C 0.45 9.16 7.47 -154.78 -1.16 8.01 16 8 N -0.68 -14.56 5.13 -54.91 -0.28 -14.84 16 9 C 0.27 6.78 2.59 -69.08 -0.18 6.60 16 10 H 0.05 1.54 7.57 -51.93 -0.39 1.14 16 11 C -0.14 -3.58 9.27 37.16 0.34 -3.23 16 12 C -0.54 -14.26 8.73 -34.44 -0.30 -14.56 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 15 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 16 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 N -0.56 -12.08 9.25 -9.97 -0.09 -12.17 16 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 23 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.79 6.68 -51.93 -0.35 0.45 16 27 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.40 7.66 6.67 -40.82 -0.27 7.39 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 272.81 15.07 4.11 4.11 Total: -1.00 -29.58 272.81 -7.69 -37.27 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.25 Total: 5.16 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.68 Total: -0.72 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.14 Total: -61.42 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.58 -7.69 -37.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349865800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.342 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds