Wall clock time and date at job start Sun Mar 29 2020 22:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31784 * 119.08795 * 2 1 4 4 C 1.32549 * 121.01377 * 180.27068 * 3 2 1 5 5 C 1.38125 * 119.19639 * 359.48111 * 4 3 2 6 6 C 1.50695 * 120.83121 * 180.27806 * 5 4 3 7 7 C 1.39624 * 118.33216 * 0.25987 * 5 4 3 8 8 N 1.38543 * 120.53009 * 180.02562 * 7 5 4 9 9 C 1.46497 * 119.99781 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.47476 * 324.99211 * 9 8 7 11 11 C 1.53004 * 109.47203 * 84.99879 * 9 8 7 12 12 C 1.50702 * 109.47102 * 204.99414 * 9 8 7 13 13 H 1.07999 * 119.99821 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00371 * 179.97438 * 12 9 8 15 15 N 1.31522 * 120.00019 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00292 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47216 * 60.00299 * 16 14 12 18 18 H 1.48500 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47169 * 300.00382 * 16 14 12 20 20 N 1.31758 * 119.08036 * 179.75131 * 2 1 3 21 21 H 1.08995 * 109.47153 * 270.25460 * 1 2 3 22 22 H 1.09010 * 109.46983 * 30.25140 * 1 2 3 23 23 H 1.09003 * 109.47567 * 150.24951 * 1 2 3 24 24 H 1.08002 * 120.40586 * 179.76583 * 4 3 2 25 25 H 1.08995 * 109.47695 * 90.00493 * 6 5 4 26 26 H 1.09007 * 109.46718 * 210.00287 * 6 5 4 27 27 H 1.08996 * 109.47419 * 330.00028 * 6 5 4 28 28 H 0.97002 * 119.99757 * 359.97438 * 8 7 5 29 29 H 1.08993 * 109.47257 * 59.99925 * 11 9 8 30 30 H 1.09001 * 109.46668 * 179.97438 * 11 9 8 31 31 H 1.08997 * 109.47016 * 299.99400 * 11 9 8 32 32 H 0.96996 * 120.00033 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1516 0.0000 4 6 3.4724 1.1962 -0.0054 5 6 4.1863 0.0138 -0.0001 6 6 5.6932 0.0215 0.0004 7 6 3.4767 -1.1887 0.0052 8 7 4.1468 -2.4013 0.0111 9 6 3.3906 -3.6560 0.0171 10 1 2.4821 -3.5299 0.6060 11 6 3.0197 -4.0349 -1.4181 12 6 4.2343 -4.7480 0.6228 13 1 5.2336 -4.5292 0.9690 14 6 3.7300 -6.0262 0.7360 15 7 2.5129 -6.2927 0.3148 16 14 4.7755 -7.3797 1.4874 17 1 5.1354 -7.0115 2.8803 18 1 4.0091 -8.6516 1.4934 19 1 6.0133 -7.5520 0.6854 20 7 2.1473 -1.1515 0.0050 21 1 -0.3633 0.0046 1.0276 22 1 -0.3633 0.8878 -0.5178 23 1 -0.3634 -0.8922 -0.5099 24 1 3.9873 2.1455 -0.0091 25 1 6.0563 0.0276 1.0280 26 1 6.0612 -0.8689 -0.5097 27 1 6.0522 0.9111 -0.5171 28 1 5.1167 -2.4194 0.0112 29 1 3.9282 -4.1611 -2.0069 30 1 2.4575 -4.9687 -1.4136 31 1 2.4095 -3.2451 -1.8562 32 1 2.1583 -7.1920 0.3941 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349865800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:13 Heat of formation + Delta-G solvation = 18.099207 kcal Electronic energy + Delta-G solvation = -14880.416132 eV Core-core repulsion = 12453.858952 eV Total energy + Delta-G solvation = -2426.557180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.81897 -37.99126 -35.42707 -34.72087 -33.03072 -30.94337 -30.21365 -27.35108 -26.54011 -24.75695 -22.68606 -22.30110 -19.28988 -18.25975 -17.76038 -16.77305 -16.23136 -15.70818 -15.20768 -15.05948 -14.46105 -14.33607 -14.00052 -13.85113 -13.32185 -13.18473 -13.06491 -12.94964 -12.90389 -12.73685 -12.33898 -12.15597 -11.83417 -11.49682 -11.08653 -10.61244 -10.35480 -9.90661 -8.72455 -8.18701 -6.35984 0.21687 0.60176 1.42618 1.44149 1.52079 2.31447 2.54219 3.01717 3.11660 3.33778 3.56441 3.94922 4.20622 4.35011 4.57662 4.74431 4.76524 4.82406 4.84600 4.96706 5.03312 5.11288 5.12368 5.25473 5.39374 5.56466 5.74919 5.81946 5.99421 6.14057 6.46480 6.71104 6.98382 7.34368 7.57868 8.86831 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035984 B = 0.007731 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.943370 B = 3620.843493 C = 4146.236241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.328 3.672 3 N -0.583 5.583 4 C 0.168 3.832 5 C -0.280 4.280 6 C -0.087 4.087 7 C 0.418 3.582 8 N -0.689 5.689 9 C 0.282 3.718 10 H 0.011 0.989 11 C -0.128 4.128 12 C -0.553 4.553 13 H 0.066 0.934 14 C 0.018 3.982 15 N -0.913 5.913 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.266 1.266 20 N -0.604 5.604 21 H 0.091 0.909 22 H 0.101 0.899 23 H 0.075 0.925 24 H 0.198 0.802 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.409 0.591 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.014 0.986 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 11.443 -0.831 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 N -0.303 5.303 4 C 0.007 3.993 5 C -0.291 4.291 6 C -0.145 4.145 7 C 0.173 3.827 8 N -0.319 5.319 9 C 0.179 3.821 10 H 0.029 0.971 11 C -0.187 4.187 12 C -0.592 4.592 13 H 0.084 0.916 14 C -0.182 4.182 15 N -0.551 5.551 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.191 1.191 20 N -0.330 5.330 21 H 0.109 0.891 22 H 0.119 0.881 23 H 0.094 0.906 24 H 0.215 0.785 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.246 0.754 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.222 11.068 -0.842 11.320 hybrid contribution 1.418 -1.114 0.313 1.830 sum 3.640 9.954 -0.528 10.612 Atomic orbital electron populations 1.20559 0.84526 1.04188 1.04250 1.23488 0.98976 0.82746 0.88879 1.68262 1.10712 1.29301 1.22071 1.23292 0.89043 0.98289 0.88726 1.21241 1.00009 0.92740 1.15071 1.20466 0.87512 1.03611 1.02863 1.19000 0.88733 0.87531 0.87461 1.45202 1.08757 1.02804 1.75092 1.18319 0.91220 0.79568 0.93009 0.97132 1.21870 0.98840 1.00427 0.97610 1.21526 1.01474 0.94474 1.41679 0.91591 1.25726 0.96226 1.00787 0.95468 1.70031 1.16706 1.21703 1.46676 0.85450 0.78625 0.77673 0.78903 1.19749 1.20872 1.19086 1.67916 1.08818 1.31973 1.24318 0.89059 0.88053 0.90564 0.78487 0.90714 0.92447 0.88576 0.75352 0.95219 0.91467 0.96730 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.20 10.32 71.23 0.73 -1.46 16 2 C 0.33 12.12 7.64 138.76 1.06 13.18 16 3 N -0.58 -19.58 10.33 -188.10 -1.94 -21.53 16 4 C 0.17 4.84 10.99 84.56 0.93 5.77 16 5 C -0.28 -8.86 5.93 -19.56 -0.12 -8.98 16 6 C -0.09 -1.98 9.64 71.23 0.69 -1.29 16 7 C 0.42 17.11 7.47 133.16 1.00 18.10 16 8 N -0.69 -29.70 5.13 -327.63 -1.68 -31.38 16 9 C 0.28 14.63 2.59 44.25 0.11 14.75 16 10 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 11 C -0.13 -6.54 9.27 71.98 0.67 -5.87 16 12 C -0.55 -29.67 8.73 25.60 0.22 -29.45 16 13 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.02 0.99 5.30 84.65 0.45 1.44 16 15 N -0.91 -52.05 11.32 21.45 0.24 -51.81 16 16 Si 0.97 42.19 29.54 68.60 2.03 44.22 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 N -0.60 -26.27 9.25 -185.44 -1.71 -27.99 16 21 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 22 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 24 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.37 6.68 -2.38 -0.02 1.35 16 27 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 28 H 0.41 15.57 6.67 -92.71 -0.62 14.95 16 29 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 31 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.27 14.37 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -64.76 272.81 3.18 -61.58 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.50 Total: 20.72 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.75 Total: 6.18 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -5.09 Total: -132.70 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -64.76 3.18 -61.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349865800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.677 kcal (2) G-P(sol) polarization free energy of solvation -64.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds