Wall clock time and date at job start Sun Mar 29 2020 21:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47235 * 280.98117 * 3 2 1 5 5 C 1.36934 * 120.00010 * 273.66100 * 4 3 2 6 6 H 1.07995 * 120.00342 * 322.08234 * 5 4 3 7 7 C 1.38815 * 119.99838 * 142.08678 * 5 4 3 8 8 N 1.31617 * 119.99751 * 157.20313 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 337.20280 * 7 5 4 10 10 H 1.48497 * 109.46982 * 95.76011 * 9 7 5 11 11 H 1.48499 * 109.46889 * 215.75798 * 9 7 5 12 12 H 1.48502 * 109.47057 * 335.75994 * 9 7 5 13 13 C 1.46504 * 119.99893 * 93.65679 * 4 3 2 14 14 C 1.50692 * 109.46889 * 89.99960 * 13 4 3 15 15 C 1.29986 * 118.56699 * 95.00336 * 14 13 4 16 16 C 1.50390 * 122.51560 * 180.43264 * 15 14 13 17 17 C 1.53135 * 109.59195 * 343.37234 * 16 15 14 18 18 O 1.43302 * 108.41317 * 47.82507 * 17 16 15 19 19 C 1.42898 * 113.02252 * 291.85595 * 18 17 16 20 20 H 4.40643 * 5.51371 * 179.97438 * 4 1 2 21 21 H 1.09003 * 109.46937 * 160.98447 * 3 2 1 22 22 H 1.08996 * 109.47142 * 40.98206 * 3 2 1 23 23 H 0.97003 * 120.00296 * 179.97438 * 8 7 5 24 24 H 1.08998 * 109.46832 * 330.00074 * 13 4 3 25 25 H 1.09001 * 109.47191 * 210.00605 * 13 4 3 26 26 H 1.08001 * 118.74292 * 0.45266 * 15 14 13 27 27 H 1.08994 * 109.44846 * 223.33410 * 16 15 14 28 28 H 1.08996 * 109.42898 * 103.39474 * 16 15 14 29 29 H 1.08996 * 109.67957 * 167.56545 * 17 16 15 30 30 H 1.08998 * 109.67848 * 288.08419 * 17 16 15 31 31 H 1.09003 * 109.32600 * 289.92095 * 19 18 17 32 32 H 1.08998 * 109.25480 * 170.28499 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2622 1.3559 5 6 3.2909 0.7719 2.2398 6 1 3.6579 1.7269 1.8942 7 6 2.9778 0.5925 3.5803 8 7 3.5192 1.3717 4.4924 9 14 1.7881 -0.7546 4.0894 10 1 2.5515 -1.9644 4.4882 11 1 0.9702 -0.2851 5.2364 12 1 0.8971 -1.0854 2.9484 13 6 3.4556 -1.6315 1.7662 14 6 4.9024 -1.9213 1.4601 15 6 5.7825 -1.7548 2.4021 16 6 7.2498 -2.0083 2.1915 17 6 7.4496 -2.8460 0.9253 18 8 6.6728 -2.2647 -0.1293 19 6 5.2647 -2.3897 0.0795 20 1 -1.0499 0.0002 0.0001 21 1 3.0089 0.9724 -0.3349 22 1 3.0097 -0.7749 -0.6739 23 1 3.3002 1.2467 5.4291 24 1 2.8218 -2.3318 1.2223 25 1 3.2818 -1.7403 2.8368 26 1 5.4471 -1.4219 3.3733 27 1 7.6520 -2.5463 3.0499 28 1 7.7702 -1.0568 2.0831 29 1 8.5037 -2.8461 0.6478 30 1 7.1173 -3.8684 1.1054 31 1 4.9743 -3.4340 -0.0356 32 1 4.7369 -1.7847 -0.6576 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352096982.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:43 Heat of formation + Delta-G solvation = 51.076885 kcal Electronic energy + Delta-G solvation = -15208.649192 eV Core-core repulsion = 12751.229281 eV Total energy + Delta-G solvation = -2457.419911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.06625 -36.45579 -33.48166 -32.40895 -31.61892 -30.47420 -26.99258 -25.69717 -24.88643 -22.78831 -21.34801 -17.86168 -17.43000 -16.94213 -15.88164 -15.78962 -15.15940 -14.63268 -14.12547 -13.66461 -13.45179 -12.98151 -12.66135 -12.40528 -12.28614 -11.97967 -11.74598 -11.39752 -10.85504 -10.60743 -10.33579 -10.03665 -9.74052 -9.65042 -9.35896 -9.18700 -8.57124 -8.20587 -7.01430 -6.06225 -3.48830 2.77812 3.25231 3.42868 3.51406 3.57251 3.60460 4.18316 4.47270 5.08792 5.15904 5.23997 5.28946 5.32738 5.42993 5.50376 5.68794 5.81791 5.87040 5.93577 6.11504 6.20605 6.31496 6.42291 6.52276 6.55743 6.73873 7.19324 7.34027 7.67822 7.96378 8.29995 8.41572 8.88034 9.62200 9.99765 11.08600 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024436 B = 0.011813 C = 0.009139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.558582 B = 2369.606413 C = 3063.130208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.166 4.166 3 C 0.239 3.761 4 N -0.588 5.588 5 C -0.265 4.265 6 H 0.081 0.919 7 C 0.042 3.958 8 N -0.893 5.893 9 Si 0.867 3.133 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.264 1.264 13 C 0.171 3.829 14 C -0.175 4.175 15 C -0.136 4.136 16 C -0.122 4.122 17 C 0.060 3.940 18 O -0.382 6.382 19 C 0.103 3.897 20 H 0.203 0.797 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.264 0.736 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -8.754 -6.661 11.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.168 4.168 3 C 0.114 3.886 4 N -0.308 5.308 5 C -0.394 4.394 6 H 0.099 0.901 7 C -0.159 4.159 8 N -0.533 5.533 9 Si 0.697 3.303 10 H -0.213 1.213 11 H -0.227 1.227 12 H -0.188 1.188 13 C 0.046 3.954 14 C -0.178 4.178 15 C -0.156 4.156 16 C -0.159 4.159 17 C -0.017 4.017 18 O -0.301 6.301 19 C 0.027 3.973 20 H 0.220 0.780 21 H 0.095 0.905 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.379 -8.582 -6.640 11.365 hybrid contribution -1.179 -0.688 0.932 1.653 sum 2.200 -9.271 -5.708 11.107 Atomic orbital electron populations 1.24687 0.95794 1.03954 1.03346 1.25142 0.96199 0.97709 0.97784 1.18239 0.81784 1.00470 0.88120 1.44169 1.72585 1.03486 1.10567 1.18757 1.38774 0.93562 0.88295 0.90099 1.25442 0.97342 0.96960 0.96151 1.69872 1.41982 1.40685 1.00807 0.87083 0.83322 0.81796 0.78111 1.21327 1.22750 1.18797 1.20220 0.89689 0.86267 0.99200 1.22273 0.99027 1.01193 0.95264 1.21971 0.93320 1.00289 1.00010 1.21065 0.95870 1.01080 0.97876 1.22587 0.95797 0.95481 0.87806 1.88072 1.17228 1.80379 1.44375 1.21347 0.81279 0.99335 0.95334 0.78011 0.90482 0.91545 0.92628 0.93695 0.92053 0.86924 0.90830 0.90274 0.89257 0.93351 0.92978 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.92 19.25 29.55 0.57 -4.35 16 2 C -0.17 -3.42 13.65 -37.12 -0.51 -3.92 16 3 C 0.24 4.79 6.15 -6.83 -0.04 4.75 16 4 N -0.59 -13.80 2.02 -177.95 -0.36 -14.16 16 5 C -0.27 -7.33 9.90 -15.06 -0.15 -7.48 16 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.04 1.21 5.29 -17.43 -0.09 1.11 16 8 N -0.89 -26.88 13.97 55.49 0.78 -26.11 16 9 Si 0.87 22.20 25.08 -169.99 -4.26 17.94 16 10 H -0.29 -7.03 6.68 56.52 0.38 -6.65 16 11 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 12 H -0.26 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.17 3.69 4.55 -5.20 -0.02 3.66 16 14 C -0.17 -3.37 5.51 -101.01 -0.56 -3.93 16 15 C -0.14 -2.66 9.53 -35.89 -0.34 -3.00 16 16 C -0.12 -1.89 6.36 -27.96 -0.18 -2.07 16 17 C 0.06 0.84 6.89 37.23 0.26 1.09 16 18 O -0.38 -6.40 10.85 -35.23 -0.38 -6.78 16 19 C 0.10 1.69 6.76 35.78 0.24 1.93 16 20 H 0.20 3.04 7.80 -54.10 -0.42 2.62 16 21 H 0.08 1.51 8.07 -51.93 -0.42 1.09 16 22 H 0.07 1.12 6.54 -51.93 -0.34 0.78 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.04 0.87 8.06 -51.93 -0.42 0.46 16 25 H 0.06 1.46 3.08 -51.93 -0.16 1.30 16 26 H 0.11 2.49 7.83 -52.49 -0.41 2.08 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.55 6.64 -51.93 -0.34 1.21 16 LS Contribution 271.70 15.07 4.09 4.09 Total: -1.00 -31.24 271.70 -5.17 -36.41 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.21 Total: 0.80 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.82 Total: -12.20 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.42 Total: -40.27 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.38 Total: -6.78 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.26 Total: 17.94 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.24 -5.17 -36.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352096982.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.487 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds