Wall clock time and date at job start Sun Mar 29 2020 21:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47235 * 280.98117 * 3 2 1 5 5 C 1.36934 * 120.00010 * 273.66100 * 4 3 2 6 6 H 1.07995 * 120.00342 * 322.08234 * 5 4 3 7 7 C 1.38815 * 119.99838 * 142.08678 * 5 4 3 8 8 N 1.31617 * 119.99751 * 157.20313 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 337.20280 * 7 5 4 10 10 H 1.48497 * 109.46982 * 95.76011 * 9 7 5 11 11 H 1.48499 * 109.46889 * 215.75798 * 9 7 5 12 12 H 1.48502 * 109.47057 * 335.75994 * 9 7 5 13 13 C 1.46504 * 119.99893 * 93.65679 * 4 3 2 14 14 C 1.50692 * 109.46889 * 89.99960 * 13 4 3 15 15 C 1.29986 * 118.56699 * 95.00336 * 14 13 4 16 16 C 1.50390 * 122.51560 * 180.43264 * 15 14 13 17 17 C 1.53135 * 109.59195 * 343.37234 * 16 15 14 18 18 O 1.43302 * 108.41317 * 47.82507 * 17 16 15 19 19 C 1.42898 * 113.02252 * 291.85595 * 18 17 16 20 20 H 4.40643 * 5.51371 * 179.97438 * 4 1 2 21 21 H 1.09003 * 109.46937 * 160.98447 * 3 2 1 22 22 H 1.08996 * 109.47142 * 40.98206 * 3 2 1 23 23 H 0.97003 * 120.00296 * 179.97438 * 8 7 5 24 24 H 1.08998 * 109.46832 * 330.00074 * 13 4 3 25 25 H 1.09001 * 109.47191 * 210.00605 * 13 4 3 26 26 H 1.08001 * 118.74292 * 0.45266 * 15 14 13 27 27 H 1.08994 * 109.44846 * 223.33410 * 16 15 14 28 28 H 1.08996 * 109.42898 * 103.39474 * 16 15 14 29 29 H 1.08996 * 109.67957 * 167.56545 * 17 16 15 30 30 H 1.08998 * 109.67848 * 288.08419 * 17 16 15 31 31 H 1.09003 * 109.32600 * 289.92095 * 19 18 17 32 32 H 1.08998 * 109.25480 * 170.28499 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2622 1.3559 5 6 3.2909 0.7719 2.2398 6 1 3.6579 1.7269 1.8942 7 6 2.9778 0.5925 3.5803 8 7 3.5192 1.3717 4.4924 9 14 1.7881 -0.7546 4.0894 10 1 2.5515 -1.9644 4.4882 11 1 0.9702 -0.2851 5.2364 12 1 0.8971 -1.0854 2.9484 13 6 3.4556 -1.6315 1.7662 14 6 4.9024 -1.9213 1.4601 15 6 5.7825 -1.7548 2.4021 16 6 7.2498 -2.0083 2.1915 17 6 7.4496 -2.8460 0.9253 18 8 6.6728 -2.2647 -0.1293 19 6 5.2647 -2.3897 0.0795 20 1 -1.0499 0.0002 0.0001 21 1 3.0089 0.9724 -0.3349 22 1 3.0097 -0.7749 -0.6739 23 1 3.3002 1.2467 5.4291 24 1 2.8218 -2.3318 1.2223 25 1 3.2818 -1.7403 2.8368 26 1 5.4471 -1.4219 3.3733 27 1 7.6520 -2.5463 3.0499 28 1 7.7702 -1.0568 2.0831 29 1 8.5037 -2.8461 0.6478 30 1 7.1173 -3.8684 1.1054 31 1 4.9743 -3.4340 -0.0356 32 1 4.7369 -1.7847 -0.6576 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352096982.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:43 Heat of formation + Delta-G solvation = 31.053147 kcal Electronic energy + Delta-G solvation = -15209.517486 eV Core-core repulsion = 12751.229281 eV Total energy + Delta-G solvation = -2458.288206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39037 -38.14899 -34.92975 -34.31122 -33.20903 -31.99329 -28.59944 -27.50622 -26.20089 -24.25643 -23.10011 -19.36984 -19.09509 -18.64426 -17.31694 -17.09443 -16.95108 -16.25607 -15.62650 -15.30194 -15.05482 -14.58260 -14.23930 -14.12029 -13.79955 -13.44417 -13.23423 -13.07435 -12.70114 -12.29166 -12.00245 -11.73164 -11.46655 -11.27210 -10.88754 -10.71019 -10.45542 -9.69400 -8.94928 -8.26308 -5.65427 1.19445 1.26389 1.34958 1.45461 2.01200 2.07577 2.34867 3.02312 3.03091 3.56544 3.78461 3.88214 3.92302 4.12175 4.37611 4.43678 4.47849 4.55818 4.64257 4.71917 4.74440 4.87073 4.93900 5.08442 5.12691 5.26360 5.65485 5.87442 6.04683 6.14230 6.29529 6.84348 6.93471 7.52809 7.94135 8.93023 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024436 B = 0.011813 C = 0.009139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.558582 B = 2369.606413 C = 3063.130208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.212 4.212 3 C 0.238 3.762 4 N -0.599 5.599 5 C -0.252 4.252 6 H 0.043 0.957 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.308 1.308 12 H -0.259 1.259 13 C 0.166 3.834 14 C -0.176 4.176 15 C -0.153 4.153 16 C -0.119 4.119 17 C 0.060 3.940 18 O -0.397 6.397 19 C 0.107 3.893 20 H 0.238 0.762 21 H 0.072 0.928 22 H 0.102 0.898 23 H 0.263 0.737 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.934 -10.997 -8.289 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.214 4.214 3 C 0.114 3.886 4 N -0.319 5.319 5 C -0.382 4.382 6 H 0.061 0.939 7 C -0.205 4.205 8 N -0.584 5.584 9 Si 0.758 3.242 10 H -0.202 1.202 11 H -0.237 1.237 12 H -0.183 1.183 13 C 0.042 3.958 14 C -0.179 4.179 15 C -0.173 4.173 16 C -0.156 4.156 17 C -0.016 4.016 18 O -0.316 6.316 19 C 0.031 3.969 20 H 0.255 0.745 21 H 0.090 0.910 22 H 0.120 0.880 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.042 -10.854 -8.303 14.000 hybrid contribution -1.068 0.049 1.371 1.738 sum 1.975 -10.805 -6.932 12.989 Atomic orbital electron populations 1.25585 0.96818 1.02099 1.01117 1.25302 0.96895 0.99523 0.99712 1.18318 0.82119 1.01565 0.86623 1.44211 1.73480 1.03179 1.11075 1.18583 1.37125 0.93414 0.89038 0.93922 1.25946 0.98884 0.99410 0.96258 1.69985 1.43996 1.43369 1.01062 0.86077 0.81049 0.79740 0.77304 1.20216 1.23661 1.18345 1.20265 0.91817 0.85669 0.98035 1.22351 0.97527 1.00973 0.97008 1.22076 0.95990 1.00673 0.98543 1.21108 0.92851 1.01456 1.00186 1.22803 0.97158 0.95639 0.86010 1.88057 1.17333 1.80968 1.45268 1.21391 0.81551 1.00983 0.92980 0.74509 0.90960 0.88043 0.92798 0.91104 0.94590 0.90830 0.88608 0.91228 0.86367 0.91447 0.89988 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.31 19.25 74.32 1.43 -6.88 16 2 C -0.21 -8.31 13.65 31.13 0.42 -7.88 16 3 C 0.24 9.22 6.15 84.57 0.52 9.74 16 4 N -0.60 -27.84 2.02 -716.91 -1.45 -29.29 16 5 C -0.25 -14.28 9.90 84.03 0.83 -13.45 16 6 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 7 C -0.01 -0.45 5.29 84.86 0.45 0.00 16 8 N -0.94 -58.84 13.97 21.65 0.30 -58.54 16 9 Si 0.93 46.79 25.08 68.60 1.72 48.52 16 10 H -0.27 -13.19 6.68 99.48 0.66 -12.53 16 11 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 12 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.17 6.95 4.55 85.63 0.39 7.34 16 14 C -0.18 -6.54 5.51 -15.59 -0.09 -6.63 16 15 C -0.15 -5.94 9.53 26.60 0.25 -5.69 16 16 C -0.12 -3.52 6.36 29.80 0.19 -3.33 16 17 C 0.06 1.47 6.89 72.03 0.50 1.97 16 18 O -0.40 -12.07 10.85 -148.98 -1.62 -13.69 16 19 C 0.11 3.17 6.76 71.09 0.48 3.65 16 20 H 0.24 6.13 7.80 -4.42 -0.03 6.10 16 21 H 0.07 2.82 8.07 -2.39 -0.02 2.80 16 22 H 0.10 3.15 6.54 -2.39 -0.02 3.14 16 23 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 24 H 0.07 2.56 8.06 -2.39 -0.02 2.54 16 25 H 0.04 1.69 3.08 -2.39 -0.01 1.68 16 26 H 0.07 3.39 7.83 -2.91 -0.02 3.37 16 27 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.10 2.93 6.64 -2.39 -0.02 2.91 16 Total: -1.00 -69.01 271.70 5.39 -63.62 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.05 Total: 10.56 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 5.38 Total: -21.17 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -1.15 Total: -87.83 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.62 Total: -13.69 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.72 Total: 48.52 kcal Total: -69.01 5.39 -63.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352096982.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.669 kcal (2) G-P(sol) polarization free energy of solvation -69.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds