Wall clock time and date at job start Sun Mar 29 2020 21:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00368 * 64.73652 * 5 3 2 8 8 N 1.31504 * 120.00400 * 187.26428 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 7.25944 * 7 5 3 10 10 H 1.48497 * 109.47184 * 270.00393 * 9 7 5 11 11 H 1.48501 * 109.46943 * 29.99952 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99981 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21611 * 120.00185 * 359.97438 * 14 13 3 16 16 C 1.43198 * 119.99580 * 179.97438 * 14 13 3 17 17 C 5.54648 * 71.49876 * 43.40896 * 2 1 3 18 18 C 6.95700 * 72.07612 * 47.45069 * 2 1 3 19 19 C 1.53002 * 117.50506 * 339.61242 * 18 17 16 20 20 C 1.52995 * 60.00182 * 252.51551 * 19 18 17 21 21 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 22 22 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 23 23 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 25 25 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 26 26 H 0.97003 * 119.99842 * 354.93865 * 8 7 5 27 27 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 28 28 H 1.09000 * 115.54917 * 125.32699 * 18 17 16 29 29 H 1.09004 * 117.49621 * 0.02562 * 19 18 17 30 30 H 1.08999 * 117.49765 * 145.01648 * 19 18 17 31 31 H 1.09002 * 117.49393 * 252.50688 * 20 19 18 32 32 H 1.08993 * 117.49954 * 107.49255 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9153 -2.6640 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3384 2.6316 0.4502 16 6 0.0735 3.2980 2.6083 17 6 -0.2301 3.8211 3.6146 18 6 -0.6111 4.4762 4.8764 19 6 0.5094 5.0798 5.7256 20 6 -0.1888 3.7968 6.1807 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 5.9924 1.1426 -0.6139 27 1 2.2853 2.1184 1.9978 28 1 -1.5702 4.9941 4.8664 29 1 1.5287 4.9922 5.3496 30 1 0.2877 5.9953 6.2741 31 1 -0.8698 3.8681 7.0288 32 1 0.3712 2.8648 6.1043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447357984.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:26 Heat of formation + Delta-G solvation = 29.609166 kcal Electronic energy + Delta-G solvation = -14371.710272 eV Core-core repulsion = 11913.359450 eV Total energy + Delta-G solvation = -2458.350821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.20725 -37.73417 -35.34556 -32.84572 -32.28974 -31.26242 -27.41782 -24.66471 -22.68522 -22.45235 -21.82798 -19.77447 -18.77546 -17.28322 -16.45415 -15.74413 -15.20813 -14.86369 -14.05971 -13.37037 -12.88568 -12.67900 -12.57621 -12.40369 -12.05276 -11.85131 -11.67507 -11.40257 -10.96631 -10.74141 -10.49868 -10.19730 -9.86633 -9.75685 -9.68811 -9.53601 -8.92727 -8.54386 -8.17816 -6.58611 -4.26409 1.80121 2.47984 3.35185 3.45060 3.47931 3.57663 3.59223 4.11290 4.38484 4.41529 4.54120 4.74783 5.02821 5.17315 5.33209 5.44648 5.67540 5.80545 5.83785 6.00561 6.04814 6.20830 6.66047 6.72524 6.84973 6.98108 7.26421 7.29604 7.40044 7.57901 8.19706 8.36341 8.63870 8.86408 9.44153 10.82362 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.006362 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.711619 B = 4399.732998 C = 4792.922389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.240 3.760 4 H 0.052 0.948 5 C -0.611 4.611 6 H 0.063 0.937 7 C 0.037 3.963 8 N -0.903 5.903 9 Si 1.048 2.952 10 H -0.279 1.279 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.685 5.685 14 C 0.614 3.386 15 O -0.533 6.533 16 C -0.193 4.193 17 C -0.089 4.089 18 C -0.058 4.058 19 C -0.162 4.162 20 C -0.162 4.162 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.269 0.731 27 H 0.396 0.604 28 H 0.131 0.869 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.486 4.516 12.318 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.137 3.863 4 H 0.070 0.930 5 C -0.649 4.649 6 H 0.081 0.919 7 C -0.169 4.169 8 N -0.536 5.536 9 Si 0.876 3.124 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.332 5.332 14 C 0.399 3.601 15 O -0.413 6.413 16 C -0.196 4.196 17 C -0.091 4.091 18 C -0.076 4.076 19 C -0.199 4.199 20 C -0.199 4.199 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.229 0.771 28 H 0.149 0.851 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.920 3.824 10.078 14.649 hybrid contribution 0.287 0.653 1.986 2.110 sum -9.633 4.477 12.064 16.074 Atomic orbital electron populations 1.21918 0.97106 0.99216 1.02222 1.22263 0.94069 0.99669 1.01599 1.19363 0.96167 0.88662 0.82059 0.92997 1.22149 0.89475 1.48364 1.04924 0.91914 1.25705 0.97490 0.93503 1.00181 1.70833 1.04407 1.42356 1.36050 0.83961 0.75372 0.77264 0.75793 1.20594 1.19766 1.21295 1.46182 1.13733 1.54868 1.18426 1.14821 0.83107 0.78781 0.83368 1.90817 1.51339 1.59921 1.39196 1.21273 1.01487 1.01932 0.94897 1.21231 0.98943 0.95443 0.93527 1.18801 1.00364 1.03552 0.84847 1.23097 0.97367 0.97633 1.01754 1.23089 1.03482 0.97515 0.95776 0.93222 0.92729 0.94713 0.91948 0.92562 0.92109 0.77074 0.85115 0.88026 0.87562 0.87576 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.52 37.15 0.32 -2.69 16 2 C -0.14 -3.07 5.20 -26.74 -0.14 -3.21 16 3 C 0.24 5.82 1.81 -69.08 -0.13 5.69 16 4 H 0.05 1.37 6.07 -51.93 -0.32 1.05 16 5 C -0.61 -16.58 9.09 -34.44 -0.31 -16.89 16 6 H 0.06 1.77 7.95 -52.48 -0.42 1.36 16 7 C 0.04 1.05 5.42 -17.82 -0.10 0.95 16 8 N -0.90 -27.00 13.69 55.43 0.76 -26.24 16 9 Si 1.05 25.35 25.39 -169.99 -4.32 21.03 16 10 H -0.28 -6.38 6.73 56.52 0.38 -6.00 16 11 H -0.27 -6.38 6.38 56.52 0.36 -6.02 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 N -0.69 -14.48 5.02 -57.38 -0.29 -14.77 16 14 C 0.61 12.85 6.23 -14.33 -0.09 12.76 16 15 O -0.53 -12.62 14.22 5.27 0.07 -12.55 16 16 C -0.19 -3.44 13.61 -38.84 -0.53 -3.97 16 17 C -0.09 -1.32 13.47 -37.12 -0.50 -1.82 16 18 C -0.06 -0.59 6.22 -93.41 -0.58 -1.17 16 19 C -0.16 -1.34 10.21 -26.73 -0.27 -1.61 16 20 C -0.16 -1.32 10.21 -26.73 -0.27 -1.59 16 21 H 0.05 1.02 5.64 -51.93 -0.29 0.73 16 22 H 0.05 1.16 7.87 -51.93 -0.41 0.75 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 1.43 4.43 -51.93 -0.23 1.20 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.27 7.95 8.72 -40.82 -0.36 7.59 16 27 H 0.40 7.55 8.49 -40.82 -0.35 7.21 16 28 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 274.70 15.07 4.14 4.14 Total: -1.00 -31.12 274.70 -6.42 -37.53 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.18 Total: 4.41 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.60 Total: -13.56 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.47 Total: -41.01 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.32 Total: 21.03 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.12 -6.42 -37.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447357984.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.141 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds