Wall clock time and date at job start Sun Mar 29 2020 21:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00368 * 64.73652 * 5 3 2 8 8 N 1.31504 * 120.00400 * 187.26428 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 7.25944 * 7 5 3 10 10 H 1.48497 * 109.47184 * 270.00393 * 9 7 5 11 11 H 1.48501 * 109.46943 * 29.99952 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99981 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21611 * 120.00185 * 359.97438 * 14 13 3 16 16 C 1.43198 * 119.99580 * 179.97438 * 14 13 3 17 17 C 5.54648 * 71.49876 * 43.40896 * 2 1 3 18 18 C 6.95700 * 72.07612 * 47.45069 * 2 1 3 19 19 C 1.53002 * 117.50506 * 339.61242 * 18 17 16 20 20 C 1.52995 * 60.00182 * 252.51551 * 19 18 17 21 21 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 22 22 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 23 23 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 25 25 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 26 26 H 0.97003 * 119.99842 * 354.93865 * 8 7 5 27 27 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 28 28 H 1.09000 * 115.54917 * 125.32699 * 18 17 16 29 29 H 1.09004 * 117.49621 * 0.02562 * 19 18 17 30 30 H 1.08999 * 117.49765 * 145.01648 * 19 18 17 31 31 H 1.09002 * 117.49393 * 252.50688 * 20 19 18 32 32 H 1.08993 * 117.49954 * 107.49255 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9153 -2.6640 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3384 2.6316 0.4502 16 6 0.0735 3.2980 2.6083 17 6 -0.2301 3.8211 3.6146 18 6 -0.6111 4.4762 4.8764 19 6 0.5094 5.0798 5.7256 20 6 -0.1888 3.7968 6.1807 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 5.9924 1.1426 -0.6139 27 1 2.2853 2.1184 1.9978 28 1 -1.5702 4.9941 4.8664 29 1 1.5287 4.9922 5.3496 30 1 0.2877 5.9953 6.2741 31 1 -0.8698 3.8681 7.0288 32 1 0.3712 2.8648 6.1043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001447357984.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:26 Heat of formation + Delta-G solvation = 8.900539 kcal Electronic energy + Delta-G solvation = -14372.608265 eV Core-core repulsion = 11913.359450 eV Total energy + Delta-G solvation = -2459.248815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.90711 -38.51713 -37.20303 -34.59358 -34.01963 -32.87309 -29.32886 -25.97842 -24.27142 -23.30059 -23.20066 -21.59746 -20.55606 -19.05660 -17.56926 -17.45698 -16.65421 -16.03844 -15.69805 -15.16179 -14.59491 -14.55720 -14.25290 -13.80914 -13.53681 -12.98117 -12.76099 -12.54757 -12.42738 -12.40714 -12.32624 -11.74362 -11.58840 -11.32008 -11.08465 -10.98684 -10.73543 -10.69312 -9.97927 -8.83117 -6.51435 0.44520 1.20279 1.41079 1.51098 1.68862 2.17053 2.31000 2.38502 2.99567 3.08754 3.17923 3.81363 4.03325 4.04042 4.24268 4.32375 4.40411 4.51242 4.76042 4.79968 4.95881 5.01983 5.08186 5.10654 5.21175 5.22609 5.46656 5.48359 5.57444 5.94903 6.12901 6.45064 6.61917 7.13282 7.27763 8.57260 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.006362 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.711619 B = 4399.732998 C = 4792.922389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.244 3.756 4 H 0.031 0.969 5 C -0.608 4.608 6 H 0.040 0.960 7 C -0.006 4.006 8 N -0.932 5.932 9 Si 1.078 2.922 10 H -0.253 1.253 11 H -0.265 1.265 12 H -0.285 1.285 13 N -0.686 5.686 14 C 0.620 3.380 15 O -0.567 6.567 16 C -0.264 4.264 17 C -0.033 4.033 18 C -0.088 4.088 19 C -0.151 4.151 20 C -0.147 4.147 21 H 0.043 0.957 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.258 0.742 27 H 0.404 0.596 28 H 0.158 0.842 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 4.772 14.150 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C 0.140 3.860 4 H 0.049 0.951 5 C -0.646 4.646 6 H 0.058 0.942 7 C -0.206 4.206 8 N -0.567 5.567 9 Si 0.900 3.100 10 H -0.178 1.178 11 H -0.190 1.190 12 H -0.211 1.211 13 N -0.333 5.333 14 C 0.408 3.592 15 O -0.449 6.449 16 C -0.267 4.267 17 C -0.035 4.035 18 C -0.105 4.105 19 C -0.188 4.188 20 C -0.184 4.184 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.239 0.761 28 H 0.175 0.825 29 H 0.108 0.892 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.699 4.082 11.953 17.216 hybrid contribution 0.844 0.694 1.612 1.947 sum -10.855 4.776 13.565 18.018 Atomic orbital electron populations 1.21807 0.95374 1.00919 1.01424 1.22167 0.95555 0.97896 1.01716 1.19092 0.93969 0.90076 0.82828 0.95109 1.22314 0.91133 1.47118 1.04072 0.94153 1.26872 0.97693 0.93383 1.02688 1.70934 1.05327 1.44466 1.35965 0.83582 0.74397 0.78758 0.73218 1.17836 1.18982 1.21085 1.45997 1.14444 1.55161 1.17732 1.14985 0.82244 0.77911 0.84071 1.90776 1.52113 1.61233 1.40813 1.20722 1.04989 1.05219 0.95751 1.22203 0.95642 0.92399 0.93277 1.19314 1.02476 1.05327 0.83430 1.23246 0.95970 0.99114 1.00435 1.23246 1.03245 0.97050 0.94851 0.93798 0.93808 0.91647 0.92300 0.91928 0.93293 0.76129 0.82455 0.89209 0.84601 0.84502 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.52 71.98 0.61 -4.85 16 2 C -0.13 -5.92 5.20 30.59 0.16 -5.76 16 3 C 0.24 11.94 1.81 44.24 0.08 12.02 16 4 H 0.03 1.65 6.07 -2.39 -0.01 1.64 16 5 C -0.61 -33.69 9.09 25.60 0.23 -33.46 16 6 H 0.04 2.36 7.95 -2.91 -0.02 2.34 16 7 C -0.01 -0.36 5.42 84.66 0.46 0.10 16 8 N -0.93 -56.80 13.69 21.45 0.29 -56.50 16 9 Si 1.08 50.86 25.39 68.60 1.74 52.61 16 10 H -0.25 -10.87 6.73 99.48 0.67 -10.20 16 11 H -0.26 -12.11 6.38 99.48 0.63 -11.48 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 N -0.69 -29.52 5.02 -453.70 -2.28 -31.80 16 14 C 0.62 26.37 6.23 85.49 0.53 26.91 16 15 O -0.57 -27.33 14.22 -4.07 -0.06 -27.39 16 16 C -0.26 -9.39 13.61 30.01 0.41 -8.98 16 17 C -0.03 -0.92 13.47 31.12 0.42 -0.50 16 18 C -0.09 -1.50 6.22 -12.60 -0.08 -1.58 16 19 C -0.15 -1.94 10.21 30.59 0.31 -1.62 16 20 C -0.15 -1.82 10.21 30.59 0.31 -1.51 16 21 H 0.04 1.77 5.64 -2.39 -0.01 1.76 16 22 H 0.04 1.81 7.87 -2.38 -0.02 1.79 16 23 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.06 2.62 4.43 -2.39 -0.01 2.61 16 25 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 26 H 0.26 15.75 8.72 -92.71 -0.81 14.94 16 27 H 0.40 15.79 8.49 -92.71 -0.79 15.00 16 28 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -68.58 274.70 3.35 -65.23 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.20 Total: 17.09 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.45 Total: -19.23 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -1.98 Total: -88.30 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 1.74 Total: 52.61 kcal Total: -68.58 3.35 -65.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447357984.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.127 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds