Wall clock time and date at job start Sun Mar 29 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.34668 * 125.98803 * 94.71625 * 12 11 10 14 14 N 1.36885 * 106.81949 * 179.84700 * 13 12 11 15 15 C 1.46500 * 126.40087 * 180.19066 * 14 13 12 16 16 C 1.52999 * 117.49702 * 188.91220 * 15 14 13 17 17 C 1.52998 * 60.00026 * 252.50988 * 16 15 14 18 18 C 1.35049 * 107.20061 * 0.41412 * 14 13 12 19 19 N 1.30500 * 108.70089 * 359.74231 * 18 14 13 20 20 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 22 22 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 23 23 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 24 24 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 25 25 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 26 26 H 1.08001 * 126.59285 * 359.96077 * 13 12 11 27 27 H 1.08998 * 115.55033 * 334.61555 * 15 14 13 28 28 H 1.08999 * 117.50513 * 359.97438 * 16 15 14 29 29 H 1.08995 * 117.49811 * 145.02343 * 16 15 14 30 30 H 1.08999 * 117.49992 * 252.51575 * 17 16 15 31 31 H 1.09006 * 117.51808 * 107.48263 * 17 16 15 32 32 H 1.08006 * 125.64790 * 179.76223 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 2.9772 -6.6737 1.0858 14 7 3.8684 -7.6113 0.6381 15 6 4.6228 -8.5577 1.4637 16 6 5.7181 -9.3766 0.7777 17 6 4.4109 -10.0499 1.2004 18 6 3.9262 -7.4976 -0.7063 19 7 3.1138 -6.5475 -1.0812 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8403 -3.5488 -0.7819 24 1 0.8798 -4.9817 0.8886 25 1 0.8805 -4.9812 -0.8914 26 1 2.6974 -6.4901 2.1126 27 1 4.7962 -8.2481 2.4943 28 1 5.8772 -9.2116 -0.2879 29 1 6.6124 -9.6059 1.3570 30 1 4.4452 -10.7220 2.0578 31 1 3.7098 -10.3275 0.4131 32 1 4.5424 -8.0943 -1.3626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474295899.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:47 Heat of formation + Delta-G solvation = 89.752061 kcal Electronic energy + Delta-G solvation = -14069.232170 eV Core-core repulsion = 11645.782091 eV Total energy + Delta-G solvation = -2423.450079 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.94609 -37.60057 -35.12969 -32.53641 -31.66892 -29.69135 -26.79074 -24.13680 -23.61206 -22.87924 -21.28204 -20.56299 -19.44696 -17.63592 -16.34398 -15.67808 -14.96260 -14.67617 -14.32805 -14.04095 -13.73637 -13.49799 -13.01136 -12.64098 -12.07573 -11.90848 -11.44783 -11.24854 -11.12207 -11.02174 -10.65410 -10.60487 -9.90382 -9.70393 -9.24581 -9.09787 -8.40706 -8.14547 -7.13393 -5.95256 -3.96416 2.12151 2.67525 3.29754 3.37741 3.40862 3.43166 3.48630 4.11107 4.33262 4.42215 4.50852 4.71544 4.92069 5.11936 5.27831 5.38772 5.40557 5.52857 5.56844 5.75258 5.82728 6.30407 6.41874 6.45684 6.97824 7.32690 7.37642 7.54415 7.88049 8.22268 8.32132 8.54122 8.73335 9.13283 9.67904 11.16010 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.063036 B = 0.004511 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.086603 B = 6205.664984 C = 6362.988708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.685 5.685 11 C 0.140 3.860 12 C 0.020 3.980 13 C -0.038 4.038 14 N -0.438 5.438 15 C 0.060 3.940 16 C -0.174 4.174 17 C -0.180 4.180 18 C 0.171 3.829 19 N -0.485 5.485 20 H 0.261 0.739 21 H -0.013 1.013 22 H 0.028 0.972 23 H 0.332 0.668 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.174 0.826 27 H 0.140 0.860 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 -19.944 3.254 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.316 5.316 11 C 0.009 3.991 12 C -0.108 4.108 13 C -0.170 4.170 14 N -0.121 5.121 15 C -0.044 4.044 16 C -0.212 4.212 17 C -0.219 4.219 18 C -0.111 4.111 19 N -0.203 5.203 20 H 0.070 0.930 21 H 0.005 0.995 22 H 0.046 0.954 23 H 0.149 0.851 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.191 0.809 27 H 0.158 0.842 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 8.988 -19.617 3.218 21.817 hybrid contribution 0.287 0.570 -0.061 0.641 sum 9.275 -19.047 3.156 21.419 Atomic orbital electron populations 1.69973 1.06053 1.26663 1.51192 1.24988 0.94877 0.99303 0.95470 0.86483 0.79770 0.83051 0.78008 1.20744 1.21286 1.19819 1.21201 0.93529 0.90266 1.49958 0.92018 1.19576 0.90675 0.87340 0.95820 1.60730 1.20991 1.00584 1.49280 1.20095 0.91802 0.86825 1.00335 1.20829 1.01936 0.99909 0.88170 1.22421 0.98283 0.95577 1.00714 1.44838 1.32664 1.27273 1.07340 1.21931 0.99156 0.87193 0.96161 1.23382 0.93493 1.02039 1.02273 1.23492 0.99820 0.94077 1.04470 1.24750 1.03227 1.01026 0.82089 1.70203 1.09893 1.09403 1.30828 0.92991 0.99480 0.95365 0.85107 0.90737 0.95024 0.80889 0.84224 0.87730 0.87036 0.87292 0.87923 0.78639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.51 -15.14 9.32 -34.44 -0.32 -15.47 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.33 5.44 -4.98 -0.03 5.30 16 10 N -0.68 -16.20 6.48 -116.34 -0.75 -16.95 16 11 C 0.14 2.83 6.22 -4.97 -0.03 2.80 16 12 C 0.02 0.37 6.60 -82.86 -0.55 -0.18 16 13 C -0.04 -0.57 11.49 -16.56 -0.19 -0.76 16 14 N -0.44 -5.50 3.09 -111.46 -0.34 -5.85 16 15 C 0.06 0.50 6.89 -67.93 -0.47 0.03 16 16 C -0.17 -1.04 9.98 -26.73 -0.27 -1.30 16 17 C -0.18 -1.12 10.39 -26.73 -0.28 -1.40 16 18 C 0.17 2.35 11.89 -90.37 -1.07 1.28 16 19 N -0.48 -8.71 11.25 -10.87 -0.12 -8.83 16 20 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 21 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.33 7.95 8.71 -39.29 -0.34 7.60 16 24 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.14 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.10 0.62 6.84 -51.93 -0.36 0.26 16 29 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.20 1.93 7.03 -52.48 -0.37 1.56 16 LS Contribution 280.54 15.07 4.23 4.23 Total: -1.00 -33.91 280.54 -8.99 -42.90 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -4.42 Total: 2.25 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.30 Total: -8.19 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.48 Total: -58.52 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.91 -8.99 -42.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474295899.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.656 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds