Wall clock time and date at job start Sun Mar 29 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.34668 * 125.98803 * 94.71625 * 12 11 10 14 14 N 1.36885 * 106.81949 * 179.84700 * 13 12 11 15 15 C 1.46500 * 126.40087 * 180.19066 * 14 13 12 16 16 C 1.52999 * 117.49702 * 188.91220 * 15 14 13 17 17 C 1.52998 * 60.00026 * 252.50988 * 16 15 14 18 18 C 1.35049 * 107.20061 * 0.41412 * 14 13 12 19 19 N 1.30500 * 108.70089 * 359.74231 * 18 14 13 20 20 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 22 22 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 23 23 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 24 24 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 25 25 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 26 26 H 1.08001 * 126.59285 * 359.96077 * 13 12 11 27 27 H 1.08998 * 115.55033 * 334.61555 * 15 14 13 28 28 H 1.08999 * 117.50513 * 359.97438 * 16 15 14 29 29 H 1.08995 * 117.49811 * 145.02343 * 16 15 14 30 30 H 1.08999 * 117.49992 * 252.51575 * 17 16 15 31 31 H 1.09006 * 117.51808 * 107.48263 * 17 16 15 32 32 H 1.08006 * 125.64790 * 179.76223 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 2.9772 -6.6737 1.0858 14 7 3.8684 -7.6113 0.6381 15 6 4.6228 -8.5577 1.4637 16 6 5.7181 -9.3766 0.7777 17 6 4.4109 -10.0499 1.2004 18 6 3.9262 -7.4976 -0.7063 19 7 3.1138 -6.5475 -1.0812 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8403 -3.5488 -0.7819 24 1 0.8798 -4.9817 0.8886 25 1 0.8805 -4.9812 -0.8914 26 1 2.6974 -6.4901 2.1126 27 1 4.7962 -8.2481 2.4943 28 1 5.8772 -9.2116 -0.2879 29 1 6.6124 -9.6059 1.3570 30 1 4.4452 -10.7220 2.0578 31 1 3.7098 -10.3275 0.4131 32 1 4.5424 -8.0943 -1.3626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474295899.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:47 Heat of formation + Delta-G solvation = 67.138264 kcal Electronic energy + Delta-G solvation = -14070.212777 eV Core-core repulsion = 11645.782091 eV Total energy + Delta-G solvation = -2424.430686 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.04805 -38.31378 -36.98806 -34.61481 -32.83459 -31.20827 -28.66869 -25.85927 -24.48460 -23.44537 -23.31436 -21.63546 -20.64344 -18.67736 -18.28418 -16.86116 -16.40439 -16.38043 -15.61381 -15.16872 -15.01457 -14.91397 -14.62800 -14.08625 -13.61803 -13.18533 -12.93709 -12.64079 -12.54397 -12.46568 -12.22923 -11.98985 -11.61812 -11.34349 -10.91240 -10.65585 -10.21755 -9.40603 -9.09034 -8.21700 -6.33300 1.05951 1.41418 1.43901 1.55815 1.79040 2.08894 2.42011 2.78890 3.11002 3.50453 3.58180 3.82945 3.88560 3.91322 4.04380 4.22024 4.42604 4.69131 4.70038 4.76190 4.94445 4.99558 5.10096 5.13206 5.26015 5.32363 5.60648 5.73795 6.01453 6.35039 6.43952 6.67146 6.86224 7.15922 7.37189 8.90119 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.063036 B = 0.004511 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.086603 B = 6205.664984 C = 6362.988708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.207 3.793 10 N -0.679 5.679 11 C 0.146 3.854 12 C -0.019 4.019 13 C -0.028 4.028 14 N -0.429 5.429 15 C 0.028 3.972 16 C -0.159 4.159 17 C -0.168 4.168 18 C 0.179 3.821 19 N -0.532 5.532 20 H 0.266 0.734 21 H -0.041 1.041 22 H 0.008 0.992 23 H 0.330 0.670 24 H 0.081 0.919 25 H 0.015 0.985 26 H 0.192 0.808 27 H 0.154 0.846 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.294 -20.959 4.041 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.309 5.309 11 C 0.016 3.984 12 C -0.147 4.147 13 C -0.162 4.162 14 N -0.111 5.111 15 C -0.075 4.075 16 C -0.197 4.197 17 C -0.206 4.206 18 C -0.103 4.103 19 N -0.252 5.252 20 H 0.075 0.925 21 H -0.024 1.024 22 H 0.026 0.974 23 H 0.146 0.854 24 H 0.099 0.901 25 H 0.034 0.966 26 H 0.209 0.791 27 H 0.172 0.828 28 H 0.125 0.875 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.112 0.888 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 11.150 -20.681 4.019 23.837 hybrid contribution -0.360 0.734 -0.292 0.868 sum 10.790 -19.947 3.727 22.982 Atomic orbital electron populations 1.70099 1.07805 1.28082 1.51388 1.25981 0.95853 1.03424 0.94434 0.85278 0.78458 0.77722 0.78490 1.19735 1.20316 1.18908 1.21515 0.93693 0.91451 1.50898 0.92054 1.19260 0.90657 0.88766 0.93423 1.60661 1.20198 1.01107 1.48935 1.20005 0.92445 0.86165 0.99833 1.20499 1.03531 1.00886 0.89773 1.22608 0.97738 0.95191 1.00704 1.45034 1.31738 1.26921 1.07376 1.22403 1.00894 0.87522 0.96635 1.23542 0.93823 0.99747 1.02549 1.23552 0.99706 0.92475 1.04884 1.25358 1.02020 0.99823 0.83100 1.70090 1.11790 1.11505 1.31775 0.92508 1.02361 0.97403 0.85426 0.90054 0.96639 0.79059 0.82837 0.87526 0.84863 0.85202 0.88815 0.75082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.25 13.29 21.45 0.28 -57.96 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.98 45.83 29.54 68.60 2.03 47.86 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -32.50 9.32 25.60 0.24 -32.26 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 11.94 5.44 85.56 0.47 12.40 16 10 N -0.68 -33.29 6.48 -521.98 -3.38 -36.68 16 11 C 0.15 6.14 6.22 85.55 0.53 6.67 16 12 C -0.02 -0.70 6.60 41.39 0.27 -0.43 16 13 C -0.03 -0.82 11.49 83.09 0.95 0.13 16 14 N -0.43 -9.99 3.09 -506.54 -1.56 -11.55 16 15 C 0.03 0.39 6.89 44.99 0.31 0.70 16 16 C -0.16 -1.30 9.98 30.59 0.31 -0.99 16 17 C -0.17 -1.53 10.39 30.59 0.32 -1.21 16 18 C 0.18 4.67 11.89 180.26 2.14 6.81 16 19 N -0.53 -19.20 11.25 -188.31 -2.12 -21.31 16 20 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 21 H -0.04 -2.57 8.14 -2.39 -0.02 -2.59 16 22 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.33 16.36 8.71 -89.69 -0.78 15.58 16 24 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 25 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.19 4.70 8.06 -2.91 -0.02 4.68 16 27 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.11 0.86 6.84 -2.39 -0.02 0.84 16 29 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.23 3.95 7.03 -2.91 -0.02 3.92 16 Total: -1.00 -74.67 280.54 1.58 -73.09 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.33 Total: 14.20 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 6.00 Total: -7.64 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -6.78 Total: -127.51 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.67 1.58 -73.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474295899.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.224 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds