Wall clock time and date at job start Sun Mar 29 2020 22:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46945 * 2 1 4 4 C 1.36939 * 119.99691 * 88.13878 * 3 2 1 5 5 H 1.08007 * 119.99920 * 178.71793 * 4 3 2 6 6 C 1.38815 * 120.00349 * 358.72492 * 4 3 2 7 7 N 1.31621 * 119.99527 * 330.19494 * 6 4 3 8 8 Si 1.86793 * 120.00138 * 150.19309 * 6 4 3 9 9 H 1.48505 * 109.47024 * 94.99560 * 8 6 4 10 10 H 1.48502 * 109.47389 * 214.99431 * 8 6 4 11 11 H 1.48507 * 109.47244 * 334.99683 * 8 6 4 12 12 C 1.46495 * 119.99957 * 268.13975 * 3 2 1 13 13 H 1.08993 * 109.47498 * 353.49711 * 12 3 2 14 14 C 1.53000 * 109.47039 * 233.49599 * 12 3 2 15 15 C 1.50704 * 109.47095 * 113.50204 * 12 3 2 16 16 C 1.38389 * 119.99893 * 205.93019 * 15 12 3 17 17 N 1.32122 * 119.99866 * 179.71784 * 16 15 12 18 18 C 1.32160 * 119.99778 * 0.51365 * 17 16 15 19 19 C 1.38344 * 119.99835 * 359.48514 * 18 17 16 20 20 N 1.32125 * 120.00158 * 25.90114 * 15 12 3 21 21 H 1.08993 * 109.47477 * 66.73764 * 1 2 3 22 22 H 1.08999 * 109.46830 * 186.74540 * 1 2 3 23 23 H 1.09004 * 109.46766 * 306.73767 * 1 2 3 24 24 H 1.08992 * 109.46828 * 240.00174 * 2 1 3 25 25 H 1.08994 * 109.47002 * 120.00071 * 2 1 3 26 26 H 0.97000 * 119.99899 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47628 * 300.00349 * 14 12 3 28 28 H 1.09009 * 109.47235 * 59.99942 * 14 12 3 29 29 H 1.08999 * 109.47233 * 179.97438 * 14 12 3 30 30 H 1.08000 * 120.00120 * 359.97019 * 16 15 12 31 31 H 1.08001 * 119.99810 * 179.76445 * 18 17 16 32 32 H 1.08005 * 119.99240 * 180.27827 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2102 2.0396 1.1853 5 1 2.5899 3.0507 1.1862 6 6 1.9169 1.4074 2.3859 7 7 0.9673 0.4974 2.4355 8 14 2.8701 1.8480 3.9307 9 1 2.1217 2.8762 4.6977 10 1 3.0434 0.6343 4.7686 11 1 4.2028 2.3840 3.5541 12 6 2.3013 2.0581 -1.2680 13 1 2.2021 1.3481 -2.0890 14 6 3.7270 2.6128 -1.2430 15 6 1.3254 3.1900 -1.4620 16 6 1.0166 3.6262 -2.7385 17 7 0.1568 4.6148 -2.9088 18 6 -0.4007 5.1938 -1.8596 19 6 -0.0920 4.7576 -0.5836 20 7 0.7641 3.7654 -0.4134 21 1 -0.3634 0.4058 -0.9440 22 1 -0.3633 -1.0206 0.1207 23 1 -0.3633 0.6147 0.8236 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 0.7626 0.0553 3.2743 27 1 3.8263 3.3229 -0.4220 28 1 4.4330 1.7941 -1.1026 29 1 3.9377 3.1160 -2.1866 30 1 1.4753 3.1559 -3.5957 31 1 -1.1006 6.0044 -1.9987 32 1 -0.5510 5.2278 0.2736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559512373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:50 Heat of formation + Delta-G solvation = 85.124070 kcal Electronic energy + Delta-G solvation = -15520.453549 eV Core-core repulsion = 13096.802786 eV Total energy + Delta-G solvation = -2423.650763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45448 -36.56975 -33.56714 -32.70545 -30.60638 -29.69219 -27.72185 -24.66156 -23.92399 -23.56363 -21.28253 -19.87475 -16.86694 -16.72250 -16.23121 -15.33801 -14.67910 -14.24035 -13.59185 -13.53779 -13.37133 -12.42931 -12.12212 -11.94353 -11.60758 -11.23661 -11.08978 -10.82125 -10.66558 -10.51854 -10.47575 -10.29420 -9.95254 -9.59974 -9.30340 -8.62740 -8.34225 -8.13270 -6.88581 -5.65167 -2.85861 1.33488 1.79427 3.46857 3.55742 3.58237 4.31086 4.58248 4.62523 4.86190 5.04408 5.27215 5.42362 5.51102 5.78512 5.90290 5.96412 6.02133 6.16117 6.35130 6.55058 6.60192 6.87261 6.91878 7.00547 7.09093 7.20503 7.74608 7.86198 7.92491 8.25699 8.37726 8.55540 9.35149 9.95516 10.39034 11.39261 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.010622 C = 0.010037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.708278 B = 2635.455243 C = 2789.136011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.167 3.833 3 N -0.579 5.579 4 C -0.203 4.203 5 H 0.081 0.919 6 C -0.008 4.008 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.294 1.294 10 H -0.293 1.293 11 H -0.283 1.283 12 C 0.217 3.783 13 H 0.073 0.927 14 C -0.148 4.148 15 C 0.084 3.916 16 C 0.029 3.971 17 N -0.448 5.448 18 C 0.013 3.987 19 C 0.047 3.953 20 N -0.379 5.379 21 H -0.002 1.002 22 H 0.019 0.981 23 H 0.096 0.904 24 H 0.006 0.994 25 H 0.084 0.916 26 H 0.247 0.753 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 4.340 -7.615 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.043 3.957 3 N -0.297 5.297 4 C -0.332 4.332 5 H 0.098 0.902 6 C -0.204 4.204 7 N -0.543 5.543 8 Si 0.714 3.286 9 H -0.222 1.222 10 H -0.220 1.220 11 H -0.209 1.209 12 C 0.106 3.894 13 H 0.091 0.909 14 C -0.207 4.207 15 C -0.059 4.059 16 C -0.133 4.133 17 N -0.163 5.163 18 C -0.146 4.146 19 C -0.114 4.114 20 N -0.093 5.093 21 H 0.017 0.983 22 H 0.038 0.962 23 H 0.115 0.885 24 H 0.024 0.976 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.175 0.825 31 H 0.173 0.827 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.424 4.195 -7.434 8.547 hybrid contribution -0.001 0.348 0.893 0.959 sum 0.423 4.543 -6.541 7.975 Atomic orbital electron populations 1.22335 0.99103 0.99202 0.99549 1.20925 0.92657 0.84204 0.97937 1.44500 1.74783 1.10196 1.00267 1.19148 1.33862 0.97837 0.82372 0.90151 1.24612 0.98895 0.99865 0.97011 1.70291 1.28054 1.31104 1.24871 0.86518 0.81010 0.76917 0.84158 1.22189 1.21972 1.20940 1.19323 0.90859 0.88775 0.90467 0.90904 1.22115 0.96835 1.01476 1.00286 1.23905 0.96969 0.96031 0.89036 1.23503 0.96522 0.95118 0.98148 1.68287 1.06499 1.07410 1.34107 1.23509 1.00364 1.00583 0.90177 1.23916 0.95345 0.94531 0.97597 1.68797 1.03875 1.03781 1.32845 0.98331 0.96216 0.88517 0.97587 0.89828 0.94248 0.92118 0.92045 0.94093 0.82512 0.82689 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.51 37.16 0.35 -3.04 16 2 C 0.17 3.95 5.66 -4.04 -0.02 3.93 16 3 N -0.58 -13.66 2.39 -166.98 -0.40 -14.06 16 4 C -0.20 -5.29 7.45 -15.06 -0.11 -5.40 16 5 H 0.08 2.14 6.64 -52.48 -0.35 1.79 16 6 C -0.01 -0.23 4.88 -17.43 -0.09 -0.31 16 7 N -0.90 -24.93 8.37 55.49 0.46 -24.47 16 8 Si 0.88 21.64 29.64 -169.99 -5.04 16.60 16 9 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.22 4.23 3.04 -69.08 -0.21 4.02 16 13 H 0.07 1.28 7.71 -51.93 -0.40 0.88 16 14 C -0.15 -2.57 9.04 37.16 0.34 -2.23 16 15 C 0.08 1.64 5.87 -82.41 -0.48 1.15 16 16 C 0.03 0.48 10.90 -17.37 -0.19 0.29 16 17 N -0.45 -7.60 10.50 -13.06 -0.14 -7.74 16 18 C 0.01 0.21 11.22 -17.37 -0.19 0.01 16 19 C 0.05 0.81 11.22 -17.38 -0.20 0.61 16 20 N -0.38 -8.00 8.21 -9.29 -0.08 -8.08 16 21 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.10 2.65 6.21 -51.93 -0.32 2.33 16 24 H 0.01 0.12 7.83 -51.93 -0.41 -0.28 16 25 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 26 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.06 1.17 6.92 -51.93 -0.36 0.82 16 28 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.16 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 265.67 15.07 4.00 4.00 Total: -1.00 -29.59 265.67 -6.24 -35.83 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.25 Total: -1.12 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.80 Total: -0.97 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.15 Total: -54.35 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.04 Total: 16.60 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.59 -6.24 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559512373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.953 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds