Wall clock time and date at job start Sun Mar 29 2020 22:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46945 * 2 1 4 4 C 1.36939 * 119.99691 * 88.13878 * 3 2 1 5 5 H 1.08007 * 119.99920 * 178.71793 * 4 3 2 6 6 C 1.38815 * 120.00349 * 358.72492 * 4 3 2 7 7 N 1.31621 * 119.99527 * 330.19494 * 6 4 3 8 8 Si 1.86793 * 120.00138 * 150.19309 * 6 4 3 9 9 H 1.48505 * 109.47024 * 94.99560 * 8 6 4 10 10 H 1.48502 * 109.47389 * 214.99431 * 8 6 4 11 11 H 1.48507 * 109.47244 * 334.99683 * 8 6 4 12 12 C 1.46495 * 119.99957 * 268.13975 * 3 2 1 13 13 H 1.08993 * 109.47498 * 353.49711 * 12 3 2 14 14 C 1.53000 * 109.47039 * 233.49599 * 12 3 2 15 15 C 1.50704 * 109.47095 * 113.50204 * 12 3 2 16 16 C 1.38389 * 119.99893 * 205.93019 * 15 12 3 17 17 N 1.32122 * 119.99866 * 179.71784 * 16 15 12 18 18 C 1.32160 * 119.99778 * 0.51365 * 17 16 15 19 19 C 1.38344 * 119.99835 * 359.48514 * 18 17 16 20 20 N 1.32125 * 120.00158 * 25.90114 * 15 12 3 21 21 H 1.08993 * 109.47477 * 66.73764 * 1 2 3 22 22 H 1.08999 * 109.46830 * 186.74540 * 1 2 3 23 23 H 1.09004 * 109.46766 * 306.73767 * 1 2 3 24 24 H 1.08992 * 109.46828 * 240.00174 * 2 1 3 25 25 H 1.08994 * 109.47002 * 120.00071 * 2 1 3 26 26 H 0.97000 * 119.99899 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47628 * 300.00349 * 14 12 3 28 28 H 1.09009 * 109.47235 * 59.99942 * 14 12 3 29 29 H 1.08999 * 109.47233 * 179.97438 * 14 12 3 30 30 H 1.08000 * 120.00120 * 359.97019 * 16 15 12 31 31 H 1.08001 * 119.99810 * 179.76445 * 18 17 16 32 32 H 1.08005 * 119.99240 * 180.27827 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2102 2.0396 1.1853 5 1 2.5899 3.0507 1.1862 6 6 1.9169 1.4074 2.3859 7 7 0.9673 0.4974 2.4355 8 14 2.8701 1.8480 3.9307 9 1 2.1217 2.8762 4.6977 10 1 3.0434 0.6343 4.7686 11 1 4.2028 2.3840 3.5541 12 6 2.3013 2.0581 -1.2680 13 1 2.2021 1.3481 -2.0890 14 6 3.7270 2.6128 -1.2430 15 6 1.3254 3.1900 -1.4620 16 6 1.0166 3.6262 -2.7385 17 7 0.1568 4.6148 -2.9088 18 6 -0.4007 5.1938 -1.8596 19 6 -0.0920 4.7576 -0.5836 20 7 0.7641 3.7654 -0.4134 21 1 -0.3634 0.4058 -0.9440 22 1 -0.3633 -1.0206 0.1207 23 1 -0.3633 0.6147 0.8236 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 0.7626 0.0553 3.2743 27 1 3.8263 3.3229 -0.4220 28 1 4.4330 1.7941 -1.1026 29 1 3.9377 3.1160 -2.1866 30 1 1.4753 3.1559 -3.5957 31 1 -1.1006 6.0044 -1.9987 32 1 -0.5510 5.2278 0.2736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559512373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:49 Heat of formation + Delta-G solvation = 66.703344 kcal Electronic energy + Delta-G solvation = -15521.252332 eV Core-core repulsion = 13096.802786 eV Total energy + Delta-G solvation = -2424.449546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.81605 -38.26827 -35.06613 -34.26835 -32.44764 -31.22661 -29.45839 -26.28647 -25.41026 -25.11175 -22.99224 -21.56954 -18.43511 -18.27922 -17.58558 -17.01353 -16.34434 -15.70401 -15.39363 -15.24770 -14.82877 -13.91948 -13.75317 -13.68222 -13.25092 -12.89265 -12.82955 -12.51081 -12.40279 -12.17435 -12.08304 -11.94059 -11.80505 -11.44716 -11.20318 -10.18011 -9.94880 -9.67224 -8.76934 -7.65487 -4.86230 0.02820 0.44261 1.49120 1.54521 1.61104 2.64673 2.98140 3.29470 3.46948 3.51012 3.66742 3.92160 4.08649 4.41060 4.59515 4.61463 4.68360 4.69406 4.72870 4.97127 5.06683 5.16737 5.23997 5.31571 5.50275 5.66253 5.82651 5.89131 6.26275 6.43942 6.57772 7.17082 7.38179 8.06766 8.44831 9.37693 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.010622 C = 0.010037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.708278 B = 2635.455243 C = 2789.136011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.170 3.830 3 N -0.592 5.592 4 C -0.183 4.183 5 H 0.070 0.930 6 C -0.060 4.060 7 N -0.920 5.920 8 Si 0.930 3.070 9 H -0.303 1.303 10 H -0.301 1.301 11 H -0.280 1.280 12 C 0.208 3.792 13 H 0.097 0.903 14 C -0.136 4.136 15 C 0.064 3.936 16 C 0.038 3.962 17 N -0.459 5.459 18 C 0.032 3.968 19 C 0.031 3.969 20 N -0.429 5.429 21 H 0.004 0.996 22 H 0.027 0.973 23 H 0.058 0.942 24 H 0.035 0.965 25 H 0.053 0.947 26 H 0.237 0.763 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.191 0.809 31 H 0.197 0.803 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 5.318 -9.846 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.045 3.955 3 N -0.312 5.312 4 C -0.313 4.313 5 H 0.088 0.912 6 C -0.253 4.253 7 N -0.570 5.570 8 Si 0.762 3.238 9 H -0.231 1.231 10 H -0.228 1.228 11 H -0.206 1.206 12 C 0.099 3.901 13 H 0.115 0.885 14 C -0.196 4.196 15 C -0.079 4.079 16 C -0.122 4.122 17 N -0.173 5.173 18 C -0.128 4.128 19 C -0.129 4.129 20 N -0.144 5.144 21 H 0.023 0.977 22 H 0.046 0.954 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.208 0.792 31 H 0.214 0.786 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.580 5.205 -9.708 11.030 hybrid contribution -0.069 0.191 1.432 1.446 sum 0.511 5.396 -8.276 9.893 Atomic orbital electron populations 1.22098 0.99380 0.98858 0.98123 1.20788 0.92341 0.84512 0.97821 1.44564 1.75077 1.10381 1.01166 1.19127 1.31752 0.97034 0.83434 0.91180 1.25063 1.00222 1.01119 0.98859 1.70435 1.29439 1.32743 1.24384 0.85775 0.80125 0.75864 0.82058 1.23132 1.22791 1.20574 1.19630 0.91719 0.89488 0.89250 0.88515 1.21992 0.95500 1.01011 1.01062 1.23741 0.97185 0.97088 0.89863 1.23883 0.95699 0.94607 0.98011 1.68438 1.06863 1.07636 1.34397 1.24099 0.99360 1.00289 0.89008 1.24272 0.95259 0.93997 0.99364 1.68615 1.05548 1.05512 1.34718 0.97657 0.95380 0.92327 0.94642 0.92853 0.95354 0.94768 0.91850 0.90645 0.79241 0.78627 0.80821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 9.51 71.98 0.68 -5.23 16 2 C 0.17 7.95 5.66 86.38 0.49 8.44 16 3 N -0.59 -27.60 2.39 -682.21 -1.63 -29.23 16 4 C -0.18 -9.62 7.45 84.03 0.63 -8.99 16 5 H 0.07 3.78 6.64 -2.91 -0.02 3.76 16 6 C -0.06 -3.32 4.88 84.86 0.41 -2.91 16 7 N -0.92 -52.73 8.37 21.65 0.18 -52.54 16 8 Si 0.93 45.69 29.64 68.60 2.03 47.72 16 9 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 10 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 C 0.21 7.69 3.04 44.25 0.13 7.82 16 13 H 0.10 3.07 7.71 -2.39 -0.02 3.05 16 14 C -0.14 -4.45 9.04 71.98 0.65 -3.80 16 15 C 0.06 2.36 5.87 42.55 0.25 2.61 16 16 C 0.04 1.16 10.90 84.69 0.92 2.09 16 17 N -0.46 -13.91 10.50 -195.22 -2.05 -15.96 16 18 C 0.03 0.88 11.22 84.67 0.95 1.83 16 19 C 0.03 1.03 11.22 84.67 0.95 1.98 16 20 N -0.43 -17.73 8.21 -183.29 -1.51 -19.24 16 21 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 22 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 3.26 6.21 -2.38 -0.01 3.25 16 24 H 0.04 1.42 7.83 -2.39 -0.02 1.40 16 25 H 0.05 2.82 6.07 -2.39 -0.01 2.81 16 26 H 0.24 13.53 8.31 -92.71 -0.77 12.76 16 27 H 0.03 1.28 6.92 -2.39 -0.02 1.26 16 28 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.20 3.70 8.06 -2.91 -0.02 3.67 16 32 H 0.17 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -64.57 265.67 4.20 -60.37 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.10 Total: 5.05 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 6.07 Total: 3.83 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -5.00 Total: -116.97 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -64.57 4.20 -60.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559512373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.070 kcal (2) G-P(sol) polarization free energy of solvation -64.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds