Wall clock time and date at job start Sun Mar 29 2020 22:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47258 * 2 1 4 4 C 1.36936 * 119.99605 * 276.30831 * 3 2 1 5 5 H 1.07996 * 119.99736 * 144.00690 * 4 3 2 6 6 C 1.38815 * 119.99875 * 323.99940 * 4 3 2 7 7 N 1.31621 * 119.99424 * 153.38834 * 6 4 3 8 8 Si 1.86794 * 120.00304 * 333.38743 * 6 4 3 9 9 H 1.48505 * 109.47124 * 95.61425 * 8 6 4 10 10 H 1.48502 * 109.47066 * 215.61338 * 8 6 4 11 11 H 1.48502 * 109.47313 * 335.61282 * 8 6 4 12 12 C 1.46498 * 119.99937 * 96.30952 * 3 2 1 13 13 H 1.09004 * 109.47008 * 179.97438 * 12 3 2 14 14 C 1.53007 * 109.47064 * 299.99545 * 12 3 2 15 15 C 1.50693 * 109.47476 * 59.99938 * 12 3 2 16 16 C 1.38386 * 120.00190 * 154.97410 * 15 12 3 17 17 N 1.32135 * 119.99888 * 179.76702 * 16 15 12 18 18 C 1.32152 * 119.99827 * 0.51233 * 17 16 15 19 19 C 1.38344 * 120.00095 * 359.48865 * 18 17 16 20 20 N 1.32128 * 120.00026 * 334.99922 * 15 12 3 21 21 H 1.09006 * 109.46726 * 60.00266 * 1 2 3 22 22 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46944 * 300.00377 * 1 2 3 24 24 H 1.08996 * 109.47417 * 239.99381 * 2 1 3 25 25 H 1.09006 * 109.46726 * 119.99734 * 2 1 3 26 26 H 0.97004 * 119.99536 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46852 * 60.00340 * 14 12 3 28 28 H 1.08999 * 109.46685 * 180.02562 * 14 12 3 29 29 H 1.08995 * 109.47026 * 300.00469 * 14 12 3 30 30 H 1.07998 * 120.00547 * 0.02723 * 16 15 12 31 31 H 1.07993 * 119.99976 * 179.76663 * 18 17 16 32 32 H 1.08003 * 120.00308 * 180.27634 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1238 2.0701 -1.1788 5 1 1.9079 3.1279 -1.2071 6 6 2.5082 1.4088 -2.3371 7 7 2.1287 1.8650 -3.5120 8 14 3.5640 -0.1283 -2.2286 9 1 2.6934 -1.3307 -2.2698 10 1 4.5088 -0.1618 -3.3738 11 1 4.3291 -0.1145 -0.9559 12 6 2.3940 2.0253 1.2610 13 1 2.7311 3.0429 1.0630 14 6 1.1832 2.0615 2.1957 15 6 3.5075 1.2455 1.9113 16 6 4.3720 1.8751 2.7896 17 7 5.3455 1.1902 3.3633 18 6 5.4998 -0.0936 3.0905 19 6 4.6357 -0.7230 2.2125 20 7 3.6588 -0.0392 1.6425 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.3970 1.4027 -4.3215 27 1 0.8466 1.0438 2.3937 28 1 1.4626 2.5411 3.1338 29 1 0.3778 2.6255 1.7254 30 1 4.2484 2.9252 3.0094 31 1 6.2978 -0.6525 3.5565 32 1 4.7591 -1.7732 1.9930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559512374.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:53 Heat of formation + Delta-G solvation = 80.568886 kcal Electronic energy + Delta-G solvation = -15552.935173 eV Core-core repulsion = 13129.086882 eV Total energy + Delta-G solvation = -2423.848291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72947 -36.81918 -33.72019 -32.70848 -31.42319 -29.69437 -28.58929 -24.57172 -24.42264 -23.26390 -22.03169 -19.83997 -17.34447 -16.67273 -16.36356 -15.54362 -15.30029 -14.49179 -14.04985 -13.68634 -13.05278 -12.68203 -12.54098 -12.18207 -12.02729 -11.82214 -11.48114 -11.25158 -10.91982 -10.82870 -10.51929 -10.23089 -10.19051 -9.61286 -9.44592 -8.84163 -8.49401 -8.39799 -6.80948 -6.00236 -3.35207 1.13565 1.52611 3.40531 3.52940 3.67098 4.06611 4.42426 4.56418 4.62162 4.81784 5.08650 5.11526 5.33514 5.58499 5.68370 5.74572 5.88990 5.94936 6.16882 6.24917 6.48373 6.51609 6.57816 6.63390 6.78977 6.95267 7.05995 7.35452 7.63728 8.06888 8.18743 8.39053 9.02864 9.74868 10.17039 11.14732 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027990 B = 0.012337 C = 0.010668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.101018 B = 2268.959074 C = 2624.027645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.132 3.868 3 N -0.583 5.583 4 C -0.271 4.271 5 H 0.078 0.922 6 C 0.041 3.959 7 N -0.894 5.894 8 Si 0.876 3.124 9 H -0.287 1.287 10 H -0.310 1.310 11 H -0.259 1.259 12 C 0.213 3.787 13 H 0.091 0.909 14 C -0.154 4.154 15 C 0.091 3.909 16 C 0.039 3.961 17 N -0.443 5.443 18 C 0.020 3.980 19 C 0.046 3.954 20 N -0.414 5.414 21 H 0.056 0.944 22 H 0.032 0.968 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.262 0.738 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -3.522 12.437 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.007 3.993 3 N -0.303 5.303 4 C -0.400 4.400 5 H 0.095 0.905 6 C -0.160 4.160 7 N -0.534 5.534 8 Si 0.707 3.293 9 H -0.216 1.216 10 H -0.239 1.239 11 H -0.184 1.184 12 C 0.104 3.896 13 H 0.109 0.891 14 C -0.213 4.213 15 C -0.052 4.052 16 C -0.122 4.122 17 N -0.157 5.157 18 C -0.139 4.139 19 C -0.113 4.113 20 N -0.129 5.129 21 H 0.076 0.924 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.374 -3.529 12.228 12.946 hybrid contribution 0.810 -1.036 -0.242 1.337 sum 3.184 -4.565 11.986 13.215 Atomic orbital electron populations 1.22348 0.99698 0.98896 1.01664 1.21290 0.91508 0.85975 1.00518 1.44118 1.72587 1.11890 1.01724 1.18769 1.41801 0.95312 0.84091 0.90462 1.25430 0.97701 0.97856 0.95045 1.69935 1.44012 1.41791 0.97686 0.86959 0.81638 0.83667 0.77067 1.21559 1.23883 1.18369 1.19625 0.88521 0.94846 0.86658 0.89083 1.22291 0.99053 1.01763 0.98237 1.23865 0.97810 0.91456 0.92024 1.23554 0.92252 1.01335 0.95056 1.68336 1.18195 1.07628 1.21555 1.23511 1.00100 0.92007 0.98329 1.23821 0.92122 1.01446 0.93959 1.68543 1.17991 1.07773 1.18642 0.92440 0.94872 0.93678 0.94195 0.90947 0.92809 0.92791 0.93569 0.91509 0.81870 0.82344 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 10.01 37.16 0.37 -2.99 16 2 C 0.13 2.94 4.15 -4.04 -0.02 2.92 16 3 N -0.58 -13.51 1.94 -166.98 -0.32 -13.83 16 4 C -0.27 -7.43 9.76 -15.06 -0.15 -7.58 16 5 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 6 C 0.04 1.19 5.26 -17.43 -0.09 1.09 16 7 N -0.89 -27.30 13.97 55.49 0.78 -26.52 16 8 Si 0.88 22.87 25.27 -169.99 -4.30 18.57 16 9 H -0.29 -7.44 6.63 56.52 0.37 -7.06 16 10 H -0.31 -8.31 7.11 56.52 0.40 -7.91 16 11 H -0.26 -6.66 6.83 56.52 0.39 -6.28 16 12 C 0.21 4.04 2.98 -69.08 -0.21 3.84 16 13 H 0.09 1.69 7.87 -51.93 -0.41 1.28 16 14 C -0.15 -2.44 8.24 37.16 0.31 -2.14 16 15 C 0.09 1.65 5.85 -82.41 -0.48 1.17 16 16 C 0.04 0.62 10.90 -17.37 -0.19 0.43 16 17 N -0.44 -7.00 10.50 -13.06 -0.14 -7.14 16 18 C 0.02 0.28 11.22 -17.37 -0.20 0.08 16 19 C 0.05 0.71 11.22 -17.37 -0.19 0.52 16 20 N -0.41 -7.82 6.68 -9.29 -0.06 -7.88 16 21 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.82 6.15 -51.93 -0.32 0.50 16 24 H 0.04 1.00 3.16 -51.93 -0.16 0.83 16 25 H 0.07 1.52 5.48 -51.93 -0.28 1.23 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.05 0.88 6.65 -51.93 -0.35 0.53 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.16 2.11 8.06 -52.49 -0.42 1.68 16 31 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 260.95 15.07 3.93 3.93 Total: -1.00 -31.92 260.95 -5.04 -36.96 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.08 Total: -1.44 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.85 Total: -2.65 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.25 Total: -55.37 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.30 Total: 18.57 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.92 -5.04 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559512374.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.529 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds