Wall clock time and date at job start Sun Mar 29 2020 22:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47258 * 2 1 4 4 C 1.36936 * 119.99605 * 276.30831 * 3 2 1 5 5 H 1.07996 * 119.99736 * 144.00690 * 4 3 2 6 6 C 1.38815 * 119.99875 * 323.99940 * 4 3 2 7 7 N 1.31621 * 119.99424 * 153.38834 * 6 4 3 8 8 Si 1.86794 * 120.00304 * 333.38743 * 6 4 3 9 9 H 1.48505 * 109.47124 * 95.61425 * 8 6 4 10 10 H 1.48502 * 109.47066 * 215.61338 * 8 6 4 11 11 H 1.48502 * 109.47313 * 335.61282 * 8 6 4 12 12 C 1.46498 * 119.99937 * 96.30952 * 3 2 1 13 13 H 1.09004 * 109.47008 * 179.97438 * 12 3 2 14 14 C 1.53007 * 109.47064 * 299.99545 * 12 3 2 15 15 C 1.50693 * 109.47476 * 59.99938 * 12 3 2 16 16 C 1.38386 * 120.00190 * 154.97410 * 15 12 3 17 17 N 1.32135 * 119.99888 * 179.76702 * 16 15 12 18 18 C 1.32152 * 119.99827 * 0.51233 * 17 16 15 19 19 C 1.38344 * 120.00095 * 359.48865 * 18 17 16 20 20 N 1.32128 * 120.00026 * 334.99922 * 15 12 3 21 21 H 1.09006 * 109.46726 * 60.00266 * 1 2 3 22 22 H 1.08998 * 109.47076 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46944 * 300.00377 * 1 2 3 24 24 H 1.08996 * 109.47417 * 239.99381 * 2 1 3 25 25 H 1.09006 * 109.46726 * 119.99734 * 2 1 3 26 26 H 0.97004 * 119.99536 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46852 * 60.00340 * 14 12 3 28 28 H 1.08999 * 109.46685 * 180.02562 * 14 12 3 29 29 H 1.08995 * 109.47026 * 300.00469 * 14 12 3 30 30 H 1.07998 * 120.00547 * 0.02723 * 16 15 12 31 31 H 1.07993 * 119.99976 * 179.76663 * 18 17 16 32 32 H 1.08003 * 120.00308 * 180.27634 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1238 2.0701 -1.1788 5 1 1.9079 3.1279 -1.2071 6 6 2.5082 1.4088 -2.3371 7 7 2.1287 1.8650 -3.5120 8 14 3.5640 -0.1283 -2.2286 9 1 2.6934 -1.3307 -2.2698 10 1 4.5088 -0.1618 -3.3738 11 1 4.3291 -0.1145 -0.9559 12 6 2.3940 2.0253 1.2610 13 1 2.7311 3.0429 1.0630 14 6 1.1832 2.0615 2.1957 15 6 3.5075 1.2455 1.9113 16 6 4.3720 1.8751 2.7896 17 7 5.3455 1.1902 3.3633 18 6 5.4998 -0.0936 3.0905 19 6 4.6357 -0.7230 2.2125 20 7 3.6588 -0.0392 1.6425 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.3970 1.4027 -4.3215 27 1 0.8466 1.0438 2.3937 28 1 1.4626 2.5411 3.1338 29 1 0.3778 2.6255 1.7254 30 1 4.2484 2.9252 3.0094 31 1 6.2978 -0.6525 3.5565 32 1 4.7591 -1.7732 1.9930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559512374.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:52 Heat of formation + Delta-G solvation = 58.999248 kcal Electronic energy + Delta-G solvation = -15553.870503 eV Core-core repulsion = 13129.086882 eV Total energy + Delta-G solvation = -2424.783621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.96477 -38.46921 -35.09234 -34.33435 -33.25411 -31.11450 -30.25924 -26.13256 -25.73409 -24.82882 -23.68506 -21.43104 -18.90055 -18.21741 -17.72131 -17.23186 -16.86150 -15.87456 -15.66106 -15.04630 -14.84754 -14.47275 -13.96412 -13.72420 -13.70031 -13.29622 -13.19148 -12.74733 -12.53394 -12.37292 -12.10343 -11.97768 -11.87055 -11.49581 -11.21390 -10.55038 -10.01963 -9.83522 -8.70529 -8.20610 -5.49891 -0.04240 0.30314 1.32081 1.40204 1.58205 2.46160 2.85556 3.02596 3.26415 3.34009 3.52493 3.79690 3.98768 4.34878 4.47181 4.48611 4.55820 4.60439 4.65929 4.86184 4.88484 4.99060 5.13886 5.18006 5.31336 5.40912 5.57872 5.67774 5.96780 6.19025 6.46070 6.96208 7.06463 7.70650 8.14173 8.99032 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027990 B = 0.012337 C = 0.010668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.101018 B = 2268.959074 C = 2624.027645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 N -0.594 5.594 4 C -0.250 4.250 5 H 0.049 0.951 6 C -0.015 4.015 7 N -0.943 5.943 8 Si 0.938 3.062 9 H -0.286 1.286 10 H -0.324 1.324 11 H -0.251 1.251 12 C 0.208 3.792 13 H 0.088 0.912 14 C -0.142 4.142 15 C 0.070 3.930 16 C 0.043 3.957 17 N -0.456 5.456 18 C 0.035 3.965 19 C 0.037 3.963 20 N -0.450 5.450 21 H 0.025 0.975 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.013 0.987 25 H 0.092 0.908 26 H 0.259 0.741 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.188 0.812 31 H 0.200 0.800 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -4.704 15.212 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 N -0.315 5.315 4 C -0.379 4.379 5 H 0.066 0.934 6 C -0.211 4.211 7 N -0.588 5.588 8 Si 0.769 3.231 9 H -0.214 1.214 10 H -0.254 1.254 11 H -0.175 1.175 12 C 0.100 3.900 13 H 0.106 0.894 14 C -0.201 4.201 15 C -0.072 4.072 16 C -0.117 4.117 17 N -0.170 5.170 18 C -0.124 4.124 19 C -0.122 4.122 20 N -0.166 5.166 21 H 0.044 0.956 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.031 0.969 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.205 0.795 31 H 0.217 0.783 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.374 -4.703 15.070 16.143 hybrid contribution 0.522 -0.663 -0.929 1.255 sum 3.896 -5.366 14.141 15.618 Atomic orbital electron populations 1.22262 0.98375 1.00280 1.00939 1.21322 0.92579 0.85373 0.99984 1.44141 1.73503 1.12038 1.01831 1.18709 1.39162 0.94276 0.85800 0.93376 1.25940 0.99462 1.00838 0.94898 1.70044 1.46467 1.43949 0.98307 0.85953 0.79833 0.80882 0.76434 1.21434 1.25360 1.17509 1.19720 0.90355 0.94487 0.85431 0.89439 1.22142 0.97317 1.01852 0.98778 1.23484 0.98077 0.91745 0.93895 1.23807 0.91363 1.02335 0.94199 1.68462 1.18168 1.08553 1.21855 1.24177 0.99972 0.91514 0.96769 1.24350 0.91500 1.02679 0.93710 1.68363 1.19880 1.08380 1.19967 0.95619 0.92495 0.91825 0.96920 0.89043 0.93186 0.93019 0.90331 0.92282 0.79538 0.78279 0.79479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.25 10.01 71.98 0.72 -5.53 16 2 C 0.13 5.74 4.15 86.38 0.36 6.09 16 3 N -0.59 -27.24 1.94 -682.19 -1.32 -28.56 16 4 C -0.25 -13.95 9.76 84.03 0.82 -13.13 16 5 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 6 C -0.01 -0.86 5.26 84.86 0.45 -0.41 16 7 N -0.94 -59.71 13.97 21.65 0.30 -59.41 16 8 Si 0.94 48.46 25.27 68.60 1.73 50.19 16 9 H -0.29 -14.53 6.63 99.48 0.66 -13.87 16 10 H -0.32 -17.20 7.11 99.48 0.71 -16.50 16 11 H -0.25 -12.45 6.83 99.48 0.68 -11.77 16 12 C 0.21 7.60 2.98 44.25 0.13 7.74 16 13 H 0.09 3.18 7.87 -2.38 -0.02 3.17 16 14 C -0.14 -4.17 8.24 71.98 0.59 -3.58 16 15 C 0.07 2.36 5.85 42.55 0.25 2.61 16 16 C 0.04 1.23 10.90 84.68 0.92 2.15 16 17 N -0.46 -12.72 10.50 -195.23 -2.05 -14.76 16 18 C 0.04 0.84 11.22 84.67 0.95 1.79 16 19 C 0.04 1.01 11.22 84.67 0.95 1.96 16 20 N -0.45 -15.77 6.68 -183.30 -1.22 -16.99 16 21 H 0.02 1.13 8.14 -2.38 -0.02 1.12 16 22 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.06 2.22 6.15 -2.39 -0.01 2.21 16 24 H 0.01 0.63 3.16 -2.39 -0.01 0.62 16 25 H 0.09 3.64 5.48 -2.38 -0.01 3.63 16 26 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 27 H 0.05 1.54 6.65 -2.38 -0.02 1.53 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 30 H 0.19 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -70.08 260.95 4.62 -65.46 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.03 Total: 4.40 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 6.14 Total: -0.32 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -4.29 Total: -119.73 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.73 Total: 50.19 kcal Total: -70.08 4.62 -65.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559512374.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.463 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds