Wall clock time and date at job start Sun Mar 29 2020 22:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99556 * 2 1 4 4 H 1.48500 * 109.47343 * 270.00456 * 3 2 1 5 5 H 1.48505 * 109.47358 * 30.00653 * 3 2 1 6 6 H 1.48503 * 109.47058 * 150.00412 * 3 2 1 7 7 C 1.37865 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00581 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47336 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.46897 * 111.00106 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.42731 * 36.06220 * 12 11 10 14 14 C 1.54761 * 110.59927 * 158.63523 * 12 11 10 15 15 C 1.54391 * 101.66946 * 93.58109 * 14 12 11 16 16 N 1.47006 * 105.60261 * 25.74230 * 15 14 12 17 17 C 1.37195 * 141.59865 * 162.90051 * 16 15 14 18 18 C 1.34563 * 106.83523 * 179.82308 * 17 16 15 19 19 N 1.34007 * 108.03194 * 0.04143 * 18 17 16 20 20 C 1.30899 * 109.30327 * 0.05161 * 19 18 17 21 21 H 0.97003 * 120.00007 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47096 * 59.99935 * 9 7 2 23 23 H 1.08993 * 109.47165 * 300.00596 * 9 7 2 24 24 H 1.08994 * 109.46983 * 59.99790 * 10 9 7 25 25 H 1.08998 * 109.46992 * 299.99863 * 10 9 7 26 26 H 1.00896 * 111.00487 * 303.95309 * 11 10 9 27 27 H 1.08994 * 111.03817 * 335.48409 * 14 12 11 28 28 H 1.09002 * 110.99803 * 211.65845 * 14 12 11 29 29 H 1.09002 * 110.23531 * 266.68391 * 15 14 12 30 30 H 1.09004 * 110.23576 * 144.79828 * 15 14 12 31 31 H 1.07997 * 126.58601 * 359.80265 * 17 16 15 32 32 H 1.08005 * 125.98383 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5110 -4.9342 -0.0012 12 6 2.4355 -6.0758 -0.0018 13 1 3.3166 -5.8521 0.5996 14 6 1.7297 -7.3482 0.5253 15 6 1.2397 -7.9995 -0.7859 16 7 2.1532 -7.5177 -1.8321 17 6 2.5621 -7.7927 -3.1125 18 6 3.4795 -6.8632 -3.4368 19 7 3.6292 -6.0441 -2.3868 20 6 2.8374 -6.4318 -1.4192 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8896 24 1 2.8721 -3.6042 0.8894 25 1 2.8721 -3.6042 -0.8905 26 1 0.8743 -4.9846 0.7799 27 1 0.8899 -7.0910 1.1707 28 1 2.4337 -7.9986 1.0446 29 1 0.2186 -7.6865 -1.0036 30 1 1.2926 -9.0856 -0.7102 31 1 2.2146 -8.6002 -3.7398 32 1 4.0037 -6.7903 -4.3783 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560752630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:30 Heat of formation + Delta-G solvation = 71.278487 kcal Electronic energy + Delta-G solvation = -14616.086703 eV Core-core repulsion = 12191.835550 eV Total energy + Delta-G solvation = -2424.251153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20365 -37.18239 -34.72091 -32.81326 -30.94976 -28.75294 -28.49074 -25.98301 -23.70374 -22.02350 -21.01278 -20.36160 -19.52240 -16.77417 -16.17927 -16.03479 -15.12906 -14.54166 -14.36733 -13.93895 -13.69708 -13.32579 -13.16538 -12.70070 -12.19599 -12.15749 -11.60967 -11.37694 -11.03774 -10.85491 -10.49113 -9.97572 -9.62877 -9.38638 -9.34927 -9.11120 -8.31792 -8.20904 -7.94782 -5.95355 -3.97202 2.23464 2.86921 3.37037 3.37239 3.42645 3.46583 3.95878 4.40393 4.45865 4.58911 4.59593 4.93935 5.13660 5.19745 5.40979 5.48957 5.52455 5.63915 5.72710 5.85212 6.37025 6.47375 6.50280 7.01997 7.07262 7.20544 7.36321 7.72128 7.80945 7.95969 8.10500 8.40267 8.48346 9.09799 9.66426 11.16254 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042526 B = 0.005897 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.257333 B = 4746.751648 C = 5097.647999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.027 3.973 10 C 0.066 3.934 11 N -0.678 5.678 12 C 0.160 3.840 13 H 0.072 0.928 14 C -0.131 4.131 15 C 0.111 3.889 16 N -0.479 5.479 17 C -0.049 4.049 18 C -0.023 4.023 19 N -0.478 5.478 20 C 0.217 3.783 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.013 0.987 24 H 0.019 0.981 25 H 0.068 0.932 26 H 0.343 0.657 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -18.091 -0.057 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.062 4.062 11 N -0.312 5.312 12 C 0.047 3.953 13 H 0.089 0.911 14 C -0.170 4.170 15 C -0.011 4.011 16 N -0.163 5.163 17 C -0.181 4.181 18 C -0.172 4.172 19 N -0.196 5.196 20 C -0.047 4.047 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.031 0.969 24 H 0.038 0.962 25 H 0.087 0.913 26 H 0.163 0.837 27 H 0.123 0.877 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.185 0.815 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.306 -17.503 -0.722 17.669 hybrid contribution 0.124 0.241 0.554 0.617 sum 2.430 -17.262 -0.167 17.433 Atomic orbital electron populations 1.69978 1.06041 1.26527 1.50957 1.24993 0.94841 0.99220 0.95324 0.86577 0.79795 0.83368 0.78163 1.20611 1.21280 1.19866 1.21178 0.93097 0.90918 1.50529 0.92632 1.19054 0.93961 0.90472 0.97543 1.22269 0.97014 0.87417 0.99489 1.60450 1.19212 1.01683 1.49833 1.20406 0.95781 0.91771 0.87322 0.91062 1.22953 1.01766 0.96162 0.96075 1.22259 0.93749 0.99557 0.85503 1.46429 1.32149 1.25737 1.11956 1.22256 1.04311 1.05599 0.85914 1.22294 1.01499 0.94477 0.98896 1.69894 1.23229 1.27033 0.99488 1.24195 0.94260 0.88674 0.97580 0.93062 0.95775 0.96875 0.96232 0.91344 0.83728 0.87746 0.89239 0.89017 0.89746 0.81513 0.81199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.73 5.23 -27.88 -0.15 0.58 16 10 C 0.07 1.44 5.46 -3.82 -0.02 1.42 16 11 N -0.68 -12.00 6.34 -106.52 -0.68 -12.67 16 12 C 0.16 2.36 3.24 -67.51 -0.22 2.14 16 13 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 14 C -0.13 -1.24 6.85 -25.07 -0.17 -1.41 16 15 C 0.11 1.10 7.77 -3.04 -0.02 1.08 16 16 N -0.48 -6.77 3.61 -112.28 -0.41 -7.17 16 17 C -0.05 -0.66 12.04 -16.45 -0.20 -0.86 16 18 C -0.02 -0.36 11.86 -17.90 -0.21 -0.57 16 19 N -0.48 -9.20 11.26 -10.56 -0.12 -9.32 16 20 C 0.22 3.74 8.11 -154.86 -1.26 2.49 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.02 0.70 8.14 -51.92 -0.42 0.28 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.07 1.65 8.09 -51.93 -0.42 1.23 16 26 H 0.34 5.33 8.14 -39.29 -0.32 5.01 16 27 H 0.10 0.80 7.62 -51.93 -0.40 0.40 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.17 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 273.18 15.07 4.12 4.12 Total: -1.00 -34.88 273.18 -8.49 -43.37 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.47 Total: 0.21 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.66 Total: -9.01 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.46 Total: -55.90 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -34.88 -8.49 -43.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560752630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.653 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds