Wall clock time and date at job start Sun Mar 29 2020 22:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99556 * 2 1 4 4 H 1.48500 * 109.47343 * 270.00456 * 3 2 1 5 5 H 1.48505 * 109.47358 * 30.00653 * 3 2 1 6 6 H 1.48503 * 109.47058 * 150.00412 * 3 2 1 7 7 C 1.37865 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00581 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47336 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.46897 * 111.00106 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.42731 * 36.06220 * 12 11 10 14 14 C 1.54761 * 110.59927 * 158.63523 * 12 11 10 15 15 C 1.54391 * 101.66946 * 93.58109 * 14 12 11 16 16 N 1.47006 * 105.60261 * 25.74230 * 15 14 12 17 17 C 1.37195 * 141.59865 * 162.90051 * 16 15 14 18 18 C 1.34563 * 106.83523 * 179.82308 * 17 16 15 19 19 N 1.34007 * 108.03194 * 0.04143 * 18 17 16 20 20 C 1.30899 * 109.30327 * 0.05161 * 19 18 17 21 21 H 0.97003 * 120.00007 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47096 * 59.99935 * 9 7 2 23 23 H 1.08993 * 109.47165 * 300.00596 * 9 7 2 24 24 H 1.08994 * 109.46983 * 59.99790 * 10 9 7 25 25 H 1.08998 * 109.46992 * 299.99863 * 10 9 7 26 26 H 1.00896 * 111.00487 * 303.95309 * 11 10 9 27 27 H 1.08994 * 111.03817 * 335.48409 * 14 12 11 28 28 H 1.09002 * 110.99803 * 211.65845 * 14 12 11 29 29 H 1.09002 * 110.23531 * 266.68391 * 15 14 12 30 30 H 1.09004 * 110.23576 * 144.79828 * 15 14 12 31 31 H 1.07997 * 126.58601 * 359.80265 * 17 16 15 32 32 H 1.08005 * 125.98383 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5110 -4.9342 -0.0012 12 6 2.4355 -6.0758 -0.0018 13 1 3.3166 -5.8521 0.5996 14 6 1.7297 -7.3482 0.5253 15 6 1.2397 -7.9995 -0.7859 16 7 2.1532 -7.5177 -1.8321 17 6 2.5621 -7.7927 -3.1125 18 6 3.4795 -6.8632 -3.4368 19 7 3.6292 -6.0441 -2.3868 20 6 2.8374 -6.4318 -1.4192 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8896 24 1 2.8721 -3.6042 0.8894 25 1 2.8721 -3.6042 -0.8905 26 1 0.8743 -4.9846 0.7799 27 1 0.8899 -7.0910 1.1707 28 1 2.4337 -7.9986 1.0446 29 1 0.2186 -7.6865 -1.0036 30 1 1.2926 -9.0856 -0.7102 31 1 2.2146 -8.6002 -3.7398 32 1 4.0037 -6.7903 -4.3783 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560752630.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:29 Heat of formation + Delta-G solvation = 46.348830 kcal Electronic energy + Delta-G solvation = -14617.167734 eV Core-core repulsion = 12191.835550 eV Total energy + Delta-G solvation = -2425.332184 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.29118 -38.40718 -36.23480 -34.76438 -32.42625 -30.42881 -29.48697 -27.36728 -25.55664 -23.04704 -22.54002 -21.80542 -20.68747 -18.57718 -17.61662 -17.10636 -16.65647 -16.36647 -15.58087 -15.26543 -14.86031 -14.74363 -14.46269 -14.19280 -13.82706 -13.29469 -13.01097 -12.89673 -12.60858 -12.48036 -12.26510 -11.95253 -11.41733 -11.25388 -10.83441 -10.57670 -10.48083 -9.50118 -9.26095 -8.21581 -6.32632 1.13300 1.39196 1.41500 1.52411 1.94932 2.16981 2.40541 2.98237 3.11773 3.38815 3.44037 3.76715 4.03782 4.25317 4.40431 4.43594 4.53934 4.63011 4.65756 4.76461 4.87292 4.92750 5.05210 5.41219 5.43058 5.63684 5.75963 5.93554 6.04022 6.16673 6.23712 6.55992 6.83400 7.26029 7.36339 8.90564 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042526 B = 0.005897 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.257333 B = 4746.751648 C = 5097.647999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.037 3.963 10 C 0.090 3.910 11 N -0.683 5.683 12 C 0.154 3.846 13 H 0.067 0.933 14 C -0.115 4.115 15 C 0.103 3.897 16 N -0.475 5.475 17 C -0.032 4.032 18 C -0.057 4.057 19 N -0.534 5.534 20 C 0.180 3.820 21 H 0.265 0.735 22 H -0.012 1.012 23 H 0.002 0.998 24 H 0.027 0.973 25 H 0.040 0.960 26 H 0.356 0.644 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.210 0.790 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -19.582 0.543 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.039 4.039 11 N -0.318 5.318 12 C 0.041 3.959 13 H 0.084 0.916 14 C -0.153 4.153 15 C -0.016 4.016 16 N -0.159 5.159 17 C -0.165 4.165 18 C -0.205 4.205 19 N -0.254 5.254 20 C -0.085 4.085 21 H 0.073 0.927 22 H 0.006 0.994 23 H 0.020 0.980 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.177 0.823 27 H 0.145 0.855 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.141 0.859 31 H 0.227 0.773 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.206 -19.025 -0.099 19.153 hybrid contribution 0.123 0.635 0.314 0.719 sum 2.329 -18.390 0.215 18.538 Atomic orbital electron populations 1.70097 1.07695 1.27837 1.51401 1.25940 0.95809 1.03256 0.94512 0.85437 0.78729 0.78372 0.78445 1.20075 1.20161 1.18744 1.21593 0.93405 0.92459 1.51039 0.92660 1.18875 0.94113 0.92025 0.95085 1.21736 0.95532 0.88235 0.98406 1.60221 1.19817 1.00931 1.50784 1.20619 0.95624 0.92785 0.86826 0.91565 1.23029 1.02568 0.93355 0.96325 1.22632 0.92925 1.01837 0.84246 1.46765 1.31833 1.24740 1.12532 1.22886 1.02473 1.05295 0.85796 1.22774 1.03276 0.95241 0.99209 1.69772 1.25202 1.29175 1.01291 1.24514 0.95306 0.90268 0.98388 0.92657 0.99402 0.97972 0.95519 0.94124 0.82271 0.85487 0.86519 0.88722 0.85905 0.77337 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.44 0.28 -57.63 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -32.72 9.11 25.60 0.23 -32.49 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.04 2.02 5.23 29.85 0.16 2.18 16 10 C 0.09 4.07 5.46 86.30 0.47 4.54 16 11 N -0.68 -24.18 6.34 -490.91 -3.11 -27.29 16 12 C 0.15 4.41 3.24 45.05 0.15 4.55 16 13 H 0.07 1.94 7.87 -2.39 -0.02 1.93 16 14 C -0.11 -1.79 6.85 31.67 0.22 -1.58 16 15 C 0.10 1.69 7.77 86.76 0.67 2.36 16 16 N -0.48 -12.47 3.61 -509.13 -1.84 -14.31 16 17 C -0.03 -0.79 12.04 83.01 1.00 0.21 16 18 C -0.06 -1.78 11.86 83.52 0.99 -0.79 16 19 N -0.53 -21.14 11.26 -187.32 -2.11 -23.24 16 20 C 0.18 6.16 8.11 138.36 1.12 7.28 16 21 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 22 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 23 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 24 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 25 H 0.04 2.05 8.09 -2.39 -0.02 2.03 16 26 H 0.36 10.79 8.14 -89.70 -0.73 10.05 16 27 H 0.13 1.43 7.62 -2.39 -0.02 1.42 16 28 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.21 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -78.68 273.18 1.10 -77.58 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.38 Total: 10.15 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 5.47 Total: -13.10 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -6.77 Total: -122.47 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -78.68 1.10 -77.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560752630.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.930 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds