Wall clock time and date at job start Sun Mar 29 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32869 * 1 3 3 C 1.47114 * 120.00155 * 2 1 4 4 C 1.32872 * 120.00034 * 185.08909 * 3 2 1 5 5 C 1.50698 * 120.00141 * 2.91785 * 4 3 2 6 6 C 1.50699 * 109.47205 * 126.98163 * 5 4 3 7 7 O 1.21295 * 120.00159 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00044 * 179.97438 * 6 5 4 9 9 C 1.37095 * 120.00246 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00017 * 223.60520 * 9 8 6 11 11 C 1.38950 * 120.00023 * 43.60258 * 9 8 6 12 12 N 1.31414 * 119.99498 * 14.33144 * 11 9 8 13 13 Si 1.86793 * 120.00110 * 194.32999 * 11 9 8 14 14 H 1.48493 * 109.47276 * 60.00641 * 13 11 9 15 15 H 1.48506 * 109.47173 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47363 * 299.99947 * 13 11 9 17 17 C 1.46499 * 119.99973 * 0.02562 * 8 6 5 18 18 C 1.53005 * 117.50179 * 183.47945 * 17 8 6 19 19 C 1.53005 * 60.00041 * 252.51058 * 18 17 8 20 20 H 1.08003 * 120.00365 * 179.97438 * 1 2 3 21 21 H 1.07997 * 119.99656 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.99868 * 180.02562 * 2 1 3 23 23 H 1.07998 * 120.00283 * 5.09109 * 3 2 1 24 24 H 1.08003 * 119.99716 * 182.91454 * 4 3 2 25 25 H 1.08996 * 109.46928 * 246.98481 * 5 4 3 26 26 H 1.09005 * 109.47089 * 6.98242 * 5 4 3 27 27 H 0.97011 * 119.99718 * 184.97484 * 12 11 9 28 28 H 1.08999 * 115.55210 * 329.18997 * 17 8 6 29 29 H 1.09003 * 117.49314 * 359.97438 * 18 17 8 30 30 H 1.09000 * 117.49780 * 145.02012 * 18 17 8 31 31 H 1.08998 * 117.49567 * 252.50925 * 19 18 17 32 32 H 1.09005 * 117.51843 * 107.47746 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 3.3891 1.2763 -0.1021 5 6 4.1330 -0.0216 -0.2839 6 6 5.0344 0.0804 -1.4873 7 8 5.0697 1.1063 -2.1334 8 7 5.8022 -0.9679 -1.8450 9 6 6.6227 -0.8750 -2.9394 10 1 6.6814 -1.6936 -3.6413 11 6 7.3786 0.2725 -3.1455 12 7 7.5316 1.1421 -2.1722 13 14 8.1774 0.5790 -4.8060 14 1 7.1284 0.6474 -5.8548 15 1 8.9235 1.8624 -4.7671 16 1 9.1159 -0.5293 -5.1160 17 6 5.7601 -2.2069 -1.0643 18 6 6.7141 -3.3315 -1.4717 19 6 5.2159 -3.4590 -1.7550 20 1 -0.5401 -0.9353 -0.0004 21 1 -0.5399 0.9353 0.0004 22 1 1.8687 -0.9353 -0.0004 23 1 1.5276 2.2075 0.0830 24 1 3.9327 2.2083 -0.0547 25 1 4.7329 -0.2239 0.6033 26 1 3.4191 -0.8319 -0.4324 27 1 7.9979 1.9768 -2.3364 28 1 5.5486 -2.0861 -0.0018 29 1 7.3728 -3.1497 -2.3209 30 1 7.1306 -3.9507 -0.6772 31 1 4.6468 -4.1621 -1.1468 32 1 4.8889 -3.3608 -2.7902 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626843765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:58 Heat of formation + Delta-G solvation = 41.093782 kcal Electronic energy + Delta-G solvation = -14961.865760 eV Core-core repulsion = 12504.012949 eV Total energy + Delta-G solvation = -2457.852811 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.62949 -36.35857 -35.34164 -32.78914 -31.41563 -30.72202 -27.35327 -24.53295 -21.75011 -21.45754 -21.15643 -19.63928 -17.76333 -16.38126 -16.02712 -15.30395 -14.74929 -14.36539 -13.94597 -13.63043 -13.44934 -12.61065 -12.08475 -12.05862 -11.60730 -11.41755 -11.09646 -10.90418 -10.82068 -10.59408 -10.41776 -10.21554 -10.10489 -9.96055 -9.73535 -8.70759 -8.09484 -7.81173 -7.00119 -6.03128 -3.85816 1.74469 3.32722 3.39195 3.41653 3.45373 4.17382 4.32130 4.78481 4.89880 5.13231 5.34415 5.37552 5.55838 5.61962 5.71013 5.77536 5.87582 5.95202 6.10930 6.22220 6.27004 6.28535 6.45747 6.70953 6.74424 6.83229 6.92966 7.08923 7.30230 7.63890 8.30601 9.10622 9.20323 9.70194 10.34603 11.02647 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026690 B = 0.009342 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.815896 B = 2996.418940 C = 3693.624441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.176 4.176 4 C -0.075 4.075 5 C -0.122 4.122 6 C 0.486 3.514 7 O -0.526 6.526 8 N -0.432 5.432 9 C -0.342 4.342 10 H 0.076 0.924 11 C 0.067 3.933 12 N -0.832 5.832 13 Si 0.910 3.090 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.278 1.278 17 C 0.076 3.924 18 C -0.175 4.175 19 C -0.209 4.209 20 H 0.095 0.905 21 H 0.093 0.907 22 H 0.115 0.885 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.263 0.737 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 -5.187 5.158 10.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.128 4.128 3 C -0.194 4.194 4 C -0.093 4.093 5 C -0.162 4.162 6 C 0.274 3.726 7 O -0.403 6.403 8 N -0.154 5.154 9 C -0.469 4.469 10 H 0.094 0.906 11 C -0.143 4.143 12 N -0.466 5.466 13 Si 0.737 3.263 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.031 4.031 18 C -0.213 4.213 19 C -0.248 4.248 20 H 0.113 0.887 21 H 0.111 0.889 22 H 0.133 0.867 23 H 0.128 0.872 24 H 0.135 0.865 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.672 -4.460 4.889 9.398 hybrid contribution 0.461 0.148 -0.714 0.863 sum -6.211 -4.312 4.175 8.637 Atomic orbital electron populations 1.24180 0.95633 1.01281 1.03284 1.22135 0.95254 0.97305 0.98117 1.21702 0.94495 0.96313 1.06890 1.23201 0.94472 0.98729 0.92946 1.20962 0.99015 0.96732 0.99460 1.19647 0.81476 0.85019 0.86474 1.90524 1.66216 1.28682 1.54858 1.42772 1.37141 1.09617 1.25854 1.18834 1.21841 1.04924 1.01332 0.90642 1.25207 0.94721 0.97077 0.97268 1.69858 1.37565 1.08316 1.30862 0.86321 0.78892 0.77401 0.83702 1.20134 1.21189 1.20330 1.21693 1.03569 0.83478 0.94319 1.23068 0.92808 1.01451 1.03932 1.23321 0.96913 1.02320 1.02226 0.88682 0.88861 0.86700 0.87159 0.86511 0.89658 0.89637 0.92635 0.87985 0.87537 0.89796 0.89812 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.58 14.43 28.88 0.42 -2.17 16 2 C -0.11 -1.60 9.25 -37.83 -0.35 -1.95 16 3 C -0.18 -2.83 9.83 -37.83 -0.37 -3.20 16 4 C -0.08 -1.39 8.84 -36.16 -0.32 -1.71 16 5 C -0.12 -2.36 4.56 -29.04 -0.13 -2.49 16 6 C 0.49 12.43 6.93 -10.99 -0.08 12.35 16 7 O -0.53 -15.65 13.56 5.54 0.08 -15.58 16 8 N -0.43 -10.89 2.85 -107.73 -0.31 -11.19 16 9 C -0.34 -9.43 7.97 -14.93 -0.12 -9.55 16 10 H 0.08 2.01 7.21 -52.49 -0.38 1.63 16 11 C 0.07 1.92 4.51 -17.47 -0.08 1.84 16 12 N -0.83 -24.92 11.37 55.50 0.63 -24.29 16 13 Si 0.91 22.10 29.58 -169.99 -5.03 17.07 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.08 1.51 5.88 -67.93 -0.40 1.11 16 18 C -0.17 -3.15 9.80 -26.73 -0.26 -3.41 16 19 C -0.21 -3.55 10.35 -26.73 -0.28 -3.83 16 20 H 0.09 1.02 8.06 -52.48 -0.42 0.59 16 21 H 0.09 1.08 8.05 -52.49 -0.42 0.66 16 22 H 0.12 1.61 5.90 -52.48 -0.31 1.30 16 23 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 24 H 0.12 2.27 8.05 -52.48 -0.42 1.85 16 25 H 0.09 1.53 7.56 -51.93 -0.39 1.13 16 26 H 0.09 1.48 5.30 -51.93 -0.28 1.20 16 27 H 0.26 7.63 8.32 -40.82 -0.34 7.29 16 28 H 0.10 1.79 6.95 -51.93 -0.36 1.43 16 29 H 0.11 2.13 6.71 -51.93 -0.35 1.78 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 275.65 15.07 4.15 4.15 Total: -1.00 -32.29 275.65 -6.60 -38.89 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.16 Total: 3.96 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.97 Total: -13.02 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.32 Total: -35.48 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.08 Total: -15.58 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.29 -6.60 -38.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626843765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.984 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds