Wall clock time and date at job start Sun Mar 29 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32869 * 1 3 3 C 1.47114 * 120.00155 * 2 1 4 4 C 1.32872 * 120.00034 * 185.08909 * 3 2 1 5 5 C 1.50698 * 120.00141 * 2.91785 * 4 3 2 6 6 C 1.50699 * 109.47205 * 126.98163 * 5 4 3 7 7 O 1.21295 * 120.00159 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00044 * 179.97438 * 6 5 4 9 9 C 1.37095 * 120.00246 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00017 * 223.60520 * 9 8 6 11 11 C 1.38950 * 120.00023 * 43.60258 * 9 8 6 12 12 N 1.31414 * 119.99498 * 14.33144 * 11 9 8 13 13 Si 1.86793 * 120.00110 * 194.32999 * 11 9 8 14 14 H 1.48493 * 109.47276 * 60.00641 * 13 11 9 15 15 H 1.48506 * 109.47173 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47363 * 299.99947 * 13 11 9 17 17 C 1.46499 * 119.99973 * 0.02562 * 8 6 5 18 18 C 1.53005 * 117.50179 * 183.47945 * 17 8 6 19 19 C 1.53005 * 60.00041 * 252.51058 * 18 17 8 20 20 H 1.08003 * 120.00365 * 179.97438 * 1 2 3 21 21 H 1.07997 * 119.99656 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.99868 * 180.02562 * 2 1 3 23 23 H 1.07998 * 120.00283 * 5.09109 * 3 2 1 24 24 H 1.08003 * 119.99716 * 182.91454 * 4 3 2 25 25 H 1.08996 * 109.46928 * 246.98481 * 5 4 3 26 26 H 1.09005 * 109.47089 * 6.98242 * 5 4 3 27 27 H 0.97011 * 119.99718 * 184.97484 * 12 11 9 28 28 H 1.08999 * 115.55210 * 329.18997 * 17 8 6 29 29 H 1.09003 * 117.49314 * 359.97438 * 18 17 8 30 30 H 1.09000 * 117.49780 * 145.02012 * 18 17 8 31 31 H 1.08998 * 117.49567 * 252.50925 * 19 18 17 32 32 H 1.09005 * 117.51843 * 107.47746 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 3.3891 1.2763 -0.1021 5 6 4.1330 -0.0216 -0.2839 6 6 5.0344 0.0804 -1.4873 7 8 5.0697 1.1063 -2.1334 8 7 5.8022 -0.9679 -1.8450 9 6 6.6227 -0.8750 -2.9394 10 1 6.6814 -1.6936 -3.6413 11 6 7.3786 0.2725 -3.1455 12 7 7.5316 1.1421 -2.1722 13 14 8.1774 0.5790 -4.8060 14 1 7.1284 0.6474 -5.8548 15 1 8.9235 1.8624 -4.7671 16 1 9.1159 -0.5293 -5.1160 17 6 5.7601 -2.2069 -1.0643 18 6 6.7141 -3.3315 -1.4717 19 6 5.2159 -3.4590 -1.7550 20 1 -0.5401 -0.9353 -0.0004 21 1 -0.5399 0.9353 0.0004 22 1 1.8687 -0.9353 -0.0004 23 1 1.5276 2.2075 0.0830 24 1 3.9327 2.2083 -0.0547 25 1 4.7329 -0.2239 0.6033 26 1 3.4191 -0.8319 -0.4324 27 1 7.9979 1.9768 -2.3364 28 1 5.5486 -2.0861 -0.0018 29 1 7.3728 -3.1497 -2.3209 30 1 7.1306 -3.9507 -0.6772 31 1 4.6468 -4.1621 -1.1468 32 1 4.8889 -3.3608 -2.7902 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626843765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:58 Heat of formation + Delta-G solvation = 21.506275 kcal Electronic energy + Delta-G solvation = -14962.715138 eV Core-core repulsion = 12504.012949 eV Total energy + Delta-G solvation = -2458.702189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42463 -37.92122 -36.77053 -34.73616 -33.00204 -32.37624 -28.93772 -26.44246 -23.19267 -22.83004 -22.58711 -21.38542 -19.18194 -18.17731 -17.78033 -16.89711 -16.46298 -16.00194 -15.34491 -15.29778 -15.12571 -14.30597 -13.79677 -13.28539 -13.15586 -12.93265 -12.91818 -12.75486 -12.42603 -12.20265 -12.12382 -11.69652 -11.64698 -11.44130 -11.20209 -10.72320 -9.92942 -9.15576 -8.96511 -8.13441 -5.99622 0.55108 1.36187 1.43162 1.47536 2.23380 2.31485 2.44713 3.11976 3.19506 3.40400 3.90861 4.12942 4.13742 4.23219 4.28822 4.36455 4.49799 4.68141 4.72096 4.89176 4.91013 5.02591 5.07139 5.29625 5.46390 5.50215 5.55017 5.65493 5.84980 6.07629 6.21583 7.05822 7.23903 7.72932 8.40909 8.90433 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026690 B = 0.009342 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.815896 B = 2996.418940 C = 3693.624441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.149 4.149 3 C -0.143 4.143 4 C -0.123 4.123 5 C -0.100 4.100 6 C 0.468 3.532 7 O -0.583 6.583 8 N -0.449 5.449 9 C -0.351 4.351 10 H 0.077 0.923 11 C 0.013 3.987 12 N -0.870 5.870 13 Si 0.968 3.032 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.256 1.256 17 C 0.044 3.956 18 C -0.173 4.173 19 C -0.180 4.180 20 H 0.120 0.880 21 H 0.105 0.895 22 H 0.120 0.880 23 H 0.125 0.875 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.256 0.744 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.708 -7.325 5.843 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.161 4.161 4 C -0.142 4.142 5 C -0.140 4.140 6 C 0.257 3.743 7 O -0.464 6.464 8 N -0.170 5.170 9 C -0.478 4.478 10 H 0.095 0.905 11 C -0.193 4.193 12 N -0.506 5.506 13 Si 0.793 3.207 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.180 1.180 17 C -0.061 4.061 18 C -0.210 4.210 19 C -0.218 4.218 20 H 0.138 0.862 21 H 0.123 0.877 22 H 0.137 0.863 23 H 0.143 0.857 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.129 0.871 27 H 0.065 0.935 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.532 -6.661 5.585 12.180 hybrid contribution 0.825 0.724 -0.907 1.424 sum -7.707 -5.937 4.679 10.795 Atomic orbital electron populations 1.24554 0.94872 1.03087 0.98159 1.22158 0.96168 0.96550 1.01840 1.21987 0.93589 0.97981 1.02543 1.22954 0.95495 0.97546 0.98200 1.20766 0.98324 0.98094 0.96767 1.20735 0.81632 0.84228 0.87680 1.90470 1.68091 1.30799 1.57049 1.43042 1.36526 1.11473 1.25970 1.19108 1.21375 1.04770 1.02593 0.90528 1.26061 0.95643 0.97154 1.00408 1.69985 1.39358 1.08596 1.32633 0.85414 0.78094 0.77725 0.79506 1.20764 1.21393 1.18002 1.22040 1.06599 0.82142 0.95355 1.23126 0.93209 1.00789 1.03925 1.23333 0.96472 1.00478 1.01543 0.86223 0.87715 0.86263 0.85695 0.89032 0.88570 0.87127 0.93459 0.85458 0.90269 0.86344 0.85498 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 14.43 66.64 0.96 -2.53 16 2 C -0.15 -3.89 9.25 23.43 0.22 -3.68 16 3 C -0.14 -4.41 9.83 23.43 0.23 -4.18 16 4 C -0.12 -4.65 8.84 24.51 0.22 -4.44 16 5 C -0.10 -3.87 4.56 29.10 0.13 -3.74 16 6 C 0.47 24.53 6.93 87.66 0.61 25.13 16 7 O -0.58 -36.38 13.56 -3.08 -0.04 -36.42 16 8 N -0.45 -22.89 2.85 -613.12 -1.75 -24.64 16 9 C -0.35 -19.75 7.97 84.04 0.67 -19.08 16 10 H 0.08 4.16 7.21 -2.91 -0.02 4.14 16 11 C 0.01 0.75 4.51 84.93 0.38 1.14 16 12 N -0.87 -54.34 11.37 21.66 0.25 -54.10 16 13 Si 0.97 46.62 29.58 68.60 2.03 48.64 16 14 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 C 0.04 1.66 5.88 44.99 0.26 1.93 16 18 C -0.17 -5.86 9.80 30.60 0.30 -5.56 16 19 C -0.18 -5.58 10.35 30.60 0.32 -5.26 16 20 H 0.12 1.92 8.06 -2.91 -0.02 1.89 16 21 H 0.10 1.93 8.05 -2.91 -0.02 1.91 16 22 H 0.12 2.97 5.90 -2.91 -0.02 2.95 16 23 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 24 H 0.09 3.83 8.05 -2.91 -0.02 3.81 16 25 H 0.10 3.40 7.56 -2.39 -0.02 3.38 16 26 H 0.11 3.63 5.30 -2.38 -0.01 3.62 16 27 H 0.26 15.60 8.32 -92.70 -0.77 14.83 16 28 H 0.13 4.16 6.95 -2.39 -0.02 4.14 16 29 H 0.08 3.13 6.71 -2.39 -0.02 3.12 16 30 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -73.60 275.65 5.88 -67.71 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.10 Total: 19.06 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 4.30 Total: -20.27 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -1.50 Total: -78.73 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.04 Total: -36.42 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Total: -73.60 5.88 -67.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626843765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.220 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds