Wall clock time and date at job start Sun Mar 29 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47117 * 120.00071 * 2 1 4 4 C 1.32876 * 120.00018 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99729 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47304 * 125.00129 * 5 4 3 7 7 O 1.21293 * 119.99687 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00513 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00625 * 179.97438 * 8 6 5 10 10 H 1.07996 * 120.00250 * 224.47480 * 9 8 6 11 11 C 1.38954 * 119.99975 * 44.47393 * 9 8 6 12 12 N 1.31413 * 119.99675 * 18.00260 * 11 9 8 13 13 Si 1.86797 * 120.00153 * 198.00532 * 11 9 8 14 14 H 1.48498 * 109.47160 * 89.99695 * 13 11 9 15 15 H 1.48495 * 109.47069 * 209.99770 * 13 11 9 16 16 H 1.48497 * 109.46967 * 330.00073 * 13 11 9 17 17 C 1.46506 * 119.99788 * 359.97438 * 8 6 5 18 18 C 1.53000 * 117.49914 * 183.20805 * 17 8 6 19 19 C 1.53001 * 117.50022 * 114.54807 * 17 8 6 20 20 H 1.08000 * 119.99968 * 359.97438 * 1 2 3 21 21 H 1.07996 * 119.99891 * 179.97438 * 1 2 3 22 22 H 1.08000 * 119.99968 * 180.02562 * 2 1 3 23 23 H 1.08000 * 119.99960 * 0.02562 * 3 2 1 24 24 H 1.08000 * 120.00022 * 0.02562 * 4 3 2 25 25 H 1.09006 * 109.46610 * 244.99887 * 5 4 3 26 26 H 1.09002 * 109.47447 * 4.99614 * 5 4 3 27 27 H 0.97006 * 119.99595 * 174.96447 * 12 11 9 28 28 H 1.09001 * 115.55168 * 328.87602 * 17 8 6 29 29 H 1.09002 * 117.49803 * 359.97438 * 18 17 8 30 30 H 1.08998 * 117.49866 * 145.01935 * 18 17 8 31 31 H 1.08996 * 117.49716 * 214.97957 * 19 17 8 32 32 H 1.08999 * 117.49598 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3931 1.2740 -0.0005 5 6 4.1465 2.5792 0.0001 6 6 5.1039 2.6060 1.1635 7 8 5.1677 1.6587 1.9183 8 7 5.8892 3.6825 1.3654 9 6 6.7598 3.7072 2.4241 10 1 6.8423 4.5940 3.0349 11 6 7.5360 2.5911 2.7115 12 7 7.7119 1.6608 1.8001 13 14 8.3295 2.4130 4.3931 14 1 7.4025 1.6947 5.3042 15 1 9.5930 1.6435 4.2653 16 1 8.6235 3.7591 4.9468 17 6 5.8124 4.8265 0.4534 18 6 6.7819 5.9860 0.6914 19 6 5.2963 6.1499 1.0220 20 1 -0.5400 0.9353 0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 1.8687 -0.9353 -0.0004 23 1 1.5243 2.2094 0.0004 24 1 3.9331 0.3387 -0.0014 25 1 4.7039 2.6772 -0.9315 26 1 3.4416 3.4057 0.0904 27 1 8.3119 0.9187 1.9741 28 1 5.5565 4.5884 -0.5790 29 1 7.4765 5.8978 1.5268 30 1 7.1635 6.5109 -0.1844 31 1 4.7012 6.7825 0.3635 32 1 5.0135 6.1692 2.0744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626843773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:03 Heat of formation + Delta-G solvation = 33.978255 kcal Electronic energy + Delta-G solvation = -14761.338168 eV Core-core repulsion = 12303.176805 eV Total energy + Delta-G solvation = -2458.161363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.59987 -36.26433 -35.19266 -32.86054 -31.76264 -30.76978 -27.27720 -24.57270 -21.74438 -21.30944 -20.69279 -19.35270 -18.81533 -16.36793 -16.02301 -15.15880 -14.73757 -14.26906 -13.91358 -13.59885 -13.48936 -12.74275 -12.11874 -11.89959 -11.67379 -11.18397 -11.06857 -10.91749 -10.83529 -10.65856 -10.62689 -10.40176 -10.15899 -9.95141 -9.72669 -8.69637 -8.13652 -7.81899 -7.00562 -6.09425 -3.85056 1.72673 3.31587 3.38441 3.41973 3.44659 4.14379 4.30084 4.78956 4.86851 5.13479 5.31339 5.34059 5.59443 5.65160 5.73129 5.77371 5.82998 5.92671 6.09723 6.22698 6.23343 6.27619 6.46004 6.62308 6.75093 6.83212 6.94170 7.10489 7.28039 7.63816 8.29799 9.08772 9.18750 9.68713 10.32374 10.99947 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.008739 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.610922 B = 3203.099130 C = 4061.639389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 C -0.175 4.175 4 C -0.075 4.075 5 C -0.114 4.114 6 C 0.487 3.513 7 O -0.531 6.531 8 N -0.431 5.431 9 C -0.349 4.349 10 H 0.077 0.923 11 C 0.073 3.927 12 N -0.835 5.835 13 Si 0.913 3.087 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.075 3.925 18 C -0.174 4.174 19 C -0.209 4.209 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.264 0.736 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.007 3.292 -5.251 9.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.122 4.122 3 C -0.193 4.193 4 C -0.093 4.093 5 C -0.154 4.154 6 C 0.275 3.725 7 O -0.408 6.408 8 N -0.152 5.152 9 C -0.475 4.475 10 H 0.094 0.906 11 C -0.137 4.137 12 N -0.469 5.469 13 Si 0.740 3.260 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.031 4.031 18 C -0.211 4.211 19 C -0.248 4.248 20 H 0.113 0.887 21 H 0.113 0.887 22 H 0.127 0.873 23 H 0.127 0.873 24 H 0.132 0.868 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.920 2.556 -4.866 8.838 hybrid contribution 0.516 -0.046 0.675 0.851 sum -6.404 2.510 -4.191 8.055 Atomic orbital electron populations 1.24160 0.95574 1.01324 1.03543 1.21996 0.95286 0.96870 0.98005 1.21744 0.94501 0.96335 1.06686 1.23198 0.94330 0.98686 0.93086 1.20833 0.98675 0.96051 0.99881 1.19670 0.81662 0.84507 0.86706 1.90532 1.68159 1.34358 1.47783 1.42786 1.34529 1.13400 1.24480 1.18843 1.20423 1.01688 1.06572 0.90584 1.25247 0.94989 0.95900 0.97577 1.69825 1.32599 1.11383 1.33054 0.86210 0.77964 0.78139 0.83695 1.20348 1.21292 1.19896 1.21704 1.03514 0.84102 0.93808 1.23067 0.92877 1.01740 1.03452 1.23325 0.97218 1.02268 1.01961 0.88743 0.88705 0.87313 0.87325 0.86756 0.89443 0.90178 0.92642 0.87996 0.87510 0.89819 0.89818 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.60 14.43 28.88 0.42 -2.18 16 2 C -0.10 -1.50 9.83 -37.83 -0.37 -1.88 16 3 C -0.17 -2.82 9.44 -37.83 -0.36 -3.17 16 4 C -0.07 -1.38 8.46 -36.16 -0.31 -1.69 16 5 C -0.11 -2.20 4.77 -29.04 -0.14 -2.34 16 6 C 0.49 12.42 6.96 -10.99 -0.08 12.35 16 7 O -0.53 -15.82 13.80 5.55 0.08 -15.74 16 8 N -0.43 -10.83 2.83 -107.73 -0.31 -11.14 16 9 C -0.35 -9.59 7.91 -14.93 -0.12 -9.71 16 10 H 0.08 2.03 7.26 -52.49 -0.38 1.65 16 11 C 0.07 2.08 4.39 -17.47 -0.08 2.00 16 12 N -0.84 -24.91 11.74 55.50 0.65 -24.26 16 13 Si 0.91 22.16 29.59 -169.99 -5.03 17.13 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 17 C 0.08 1.50 5.87 -67.93 -0.40 1.10 16 18 C -0.17 -3.13 9.80 -26.69 -0.26 -3.39 16 19 C -0.21 -3.55 10.36 -26.69 -0.28 -3.83 16 20 H 0.09 1.09 8.05 -52.49 -0.42 0.67 16 21 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 22 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 23 H 0.11 1.60 7.87 -52.49 -0.41 1.19 16 24 H 0.11 2.24 8.05 -52.49 -0.42 1.82 16 25 H 0.09 1.55 7.56 -51.93 -0.39 1.15 16 26 H 0.08 1.36 7.78 -51.93 -0.40 0.96 16 27 H 0.26 7.53 8.32 -40.82 -0.34 7.19 16 28 H 0.10 1.79 6.96 -51.93 -0.36 1.43 16 29 H 0.11 2.14 6.73 -51.93 -0.35 1.79 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 280.65 15.07 4.23 4.23 Total: -1.00 -32.31 280.65 -6.74 -39.05 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.40 Total: 3.46 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.96 Total: -12.74 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.35 Total: -35.40 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.08 Total: -15.74 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.31 -6.74 -39.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626843773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.030 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds