Wall clock time and date at job start Sun Mar 29 2020 21:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47117 * 120.00071 * 2 1 4 4 C 1.32876 * 120.00018 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99729 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47304 * 125.00129 * 5 4 3 7 7 O 1.21293 * 119.99687 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00513 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00625 * 179.97438 * 8 6 5 10 10 H 1.07996 * 120.00250 * 224.47480 * 9 8 6 11 11 C 1.38954 * 119.99975 * 44.47393 * 9 8 6 12 12 N 1.31413 * 119.99675 * 18.00260 * 11 9 8 13 13 Si 1.86797 * 120.00153 * 198.00532 * 11 9 8 14 14 H 1.48498 * 109.47160 * 89.99695 * 13 11 9 15 15 H 1.48495 * 109.47069 * 209.99770 * 13 11 9 16 16 H 1.48497 * 109.46967 * 330.00073 * 13 11 9 17 17 C 1.46506 * 119.99788 * 359.97438 * 8 6 5 18 18 C 1.53000 * 117.49914 * 183.20805 * 17 8 6 19 19 C 1.53001 * 117.50022 * 114.54807 * 17 8 6 20 20 H 1.08000 * 119.99968 * 359.97438 * 1 2 3 21 21 H 1.07996 * 119.99891 * 179.97438 * 1 2 3 22 22 H 1.08000 * 119.99968 * 180.02562 * 2 1 3 23 23 H 1.08000 * 119.99960 * 0.02562 * 3 2 1 24 24 H 1.08000 * 120.00022 * 0.02562 * 4 3 2 25 25 H 1.09006 * 109.46610 * 244.99887 * 5 4 3 26 26 H 1.09002 * 109.47447 * 4.99614 * 5 4 3 27 27 H 0.97006 * 119.99595 * 174.96447 * 12 11 9 28 28 H 1.09001 * 115.55168 * 328.87602 * 17 8 6 29 29 H 1.09002 * 117.49803 * 359.97438 * 18 17 8 30 30 H 1.08998 * 117.49866 * 145.01935 * 18 17 8 31 31 H 1.08996 * 117.49716 * 214.97957 * 19 17 8 32 32 H 1.08999 * 117.49598 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3931 1.2740 -0.0005 5 6 4.1465 2.5792 0.0001 6 6 5.1039 2.6060 1.1635 7 8 5.1677 1.6587 1.9183 8 7 5.8892 3.6825 1.3654 9 6 6.7598 3.7072 2.4241 10 1 6.8423 4.5940 3.0349 11 6 7.5360 2.5911 2.7115 12 7 7.7119 1.6608 1.8001 13 14 8.3295 2.4130 4.3931 14 1 7.4025 1.6947 5.3042 15 1 9.5930 1.6435 4.2653 16 1 8.6235 3.7591 4.9468 17 6 5.8124 4.8265 0.4534 18 6 6.7819 5.9860 0.6914 19 6 5.2963 6.1499 1.0220 20 1 -0.5400 0.9353 0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 1.8687 -0.9353 -0.0004 23 1 1.5243 2.2094 0.0004 24 1 3.9331 0.3387 -0.0014 25 1 4.7039 2.6772 -0.9315 26 1 3.4416 3.4057 0.0904 27 1 8.3119 0.9187 1.9741 28 1 5.5565 4.5884 -0.5790 29 1 7.4765 5.8978 1.5268 30 1 7.1635 6.5109 -0.1844 31 1 4.7012 6.7825 0.3635 32 1 5.0135 6.1692 2.0744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626843773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:02 Heat of formation + Delta-G solvation = 14.467857 kcal Electronic energy + Delta-G solvation = -14762.184203 eV Core-core repulsion = 12303.176805 eV Total energy + Delta-G solvation = -2459.007398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40313 -37.87347 -36.55043 -34.78436 -33.25708 -32.58007 -28.83187 -26.45508 -23.20963 -22.84795 -22.15737 -20.71420 -20.39069 -18.23781 -17.77479 -16.79717 -16.42468 -15.96039 -15.39049 -15.17054 -15.00680 -14.39626 -13.81354 -13.49854 -13.03013 -12.95052 -12.83833 -12.67787 -12.35124 -12.19752 -12.07252 -11.88476 -11.74706 -11.63646 -11.19113 -10.73136 -9.98008 -9.15750 -8.95448 -8.20100 -5.98449 0.53038 1.34213 1.42911 1.47539 2.21393 2.27394 2.43710 3.11918 3.18210 3.39103 3.89849 4.10299 4.15077 4.22157 4.31537 4.40950 4.47912 4.70936 4.71922 4.78329 4.91717 4.98853 5.08129 5.30465 5.46990 5.48531 5.51597 5.67950 5.81454 6.05581 6.21588 7.04752 7.22630 7.71940 8.38835 8.88784 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.008739 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.610922 B = 3203.099130 C = 4061.639389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.148 4.148 3 C -0.141 4.141 4 C -0.120 4.120 5 C -0.094 4.094 6 C 0.468 3.532 7 O -0.589 6.589 8 N -0.447 5.447 9 C -0.356 4.356 10 H 0.076 0.924 11 C 0.020 3.980 12 N -0.874 5.874 13 Si 0.969 3.031 14 H -0.293 1.293 15 H -0.280 1.280 16 H -0.253 1.253 17 C 0.043 3.957 18 C -0.172 4.172 19 C -0.179 4.179 20 H 0.110 0.890 21 H 0.117 0.883 22 H 0.104 0.896 23 H 0.130 0.870 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.258 0.742 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 5.034 -6.094 11.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.159 4.159 4 C -0.139 4.139 5 C -0.133 4.133 6 C 0.258 3.742 7 O -0.471 6.471 8 N -0.168 5.168 9 C -0.483 4.483 10 H 0.094 0.906 11 C -0.186 4.186 12 N -0.509 5.509 13 Si 0.794 3.206 14 H -0.220 1.220 15 H -0.205 1.205 16 H -0.176 1.176 17 C -0.062 4.062 18 C -0.210 4.210 19 C -0.218 4.218 20 H 0.129 0.871 21 H 0.135 0.865 22 H 0.122 0.878 23 H 0.148 0.852 24 H 0.105 0.895 25 H 0.118 0.882 26 H 0.127 0.873 27 H 0.068 0.932 28 H 0.146 0.854 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.905 4.360 -5.728 11.451 hybrid contribution 0.923 -0.545 0.918 1.412 sum -7.982 3.815 -4.810 10.070 Atomic orbital electron populations 1.24533 0.94630 1.03219 0.98160 1.22042 0.96345 0.96244 1.02001 1.22025 0.93635 0.97905 1.02368 1.22944 0.95259 0.97386 0.98323 1.20655 0.97794 0.97450 0.97440 1.20778 0.82037 0.83665 0.87753 1.90479 1.70023 1.36422 1.50172 1.43053 1.33875 1.14943 1.24928 1.19093 1.20056 1.01444 1.07731 0.90598 1.26073 0.96088 0.95851 1.00615 1.69939 1.34002 1.12106 1.34855 0.85328 0.76908 0.78838 0.79494 1.21976 1.20541 1.17637 1.22060 1.06458 0.83311 0.94367 1.23120 0.93128 1.00874 1.03839 1.23336 0.96831 0.99980 1.01655 0.87142 0.86460 0.87803 0.85200 0.89521 0.88176 0.87344 0.93248 0.85370 0.90289 0.86396 0.85517 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 14.43 66.64 0.96 -2.60 16 2 C -0.15 -4.07 9.83 23.43 0.23 -3.84 16 3 C -0.14 -4.36 9.44 23.43 0.22 -4.14 16 4 C -0.12 -4.53 8.46 24.51 0.21 -4.32 16 5 C -0.09 -3.57 4.77 29.10 0.14 -3.43 16 6 C 0.47 24.42 6.96 87.66 0.61 25.03 16 7 O -0.59 -36.77 13.80 -3.07 -0.04 -36.81 16 8 N -0.45 -22.71 2.83 -613.14 -1.74 -24.44 16 9 C -0.36 -19.98 7.91 84.04 0.67 -19.32 16 10 H 0.08 4.13 7.26 -2.91 -0.02 4.11 16 11 C 0.02 1.14 4.39 84.93 0.37 1.51 16 12 N -0.87 -54.31 11.74 21.66 0.25 -54.05 16 13 Si 0.97 46.76 29.59 68.60 2.03 48.79 16 14 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 16 H -0.25 -11.15 7.11 99.48 0.71 -10.44 16 17 C 0.04 1.64 5.87 44.99 0.26 1.90 16 18 C -0.17 -5.84 9.80 30.62 0.30 -5.54 16 19 C -0.18 -5.56 10.36 30.62 0.32 -5.24 16 20 H 0.11 2.01 8.05 -2.91 -0.02 1.99 16 21 H 0.12 1.98 8.06 -2.91 -0.02 1.95 16 22 H 0.10 2.90 8.06 -2.91 -0.02 2.88 16 23 H 0.13 3.39 7.87 -2.91 -0.02 3.37 16 24 H 0.09 3.67 8.05 -2.91 -0.02 3.64 16 25 H 0.10 3.46 7.56 -2.38 -0.02 3.44 16 26 H 0.11 3.43 7.78 -2.39 -0.02 3.41 16 27 H 0.26 15.49 8.32 -92.70 -0.77 14.72 16 28 H 0.13 4.15 6.96 -2.39 -0.02 4.14 16 29 H 0.08 3.13 6.73 -2.39 -0.02 3.12 16 30 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -73.87 280.65 5.88 -67.99 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.08 Total: 18.51 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 4.29 Total: -19.99 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.48 Total: -78.50 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.04 Total: -36.81 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -73.87 5.88 -67.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626843773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.458 kcal (2) G-P(sol) polarization free energy of solvation -73.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds