Wall clock time and date at job start Sun Mar 29 2020 21:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99979 * 3 2 1 6 6 H 1.48496 * 109.47151 * 59.99703 * 3 2 1 7 7 C 1.37872 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00742 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46924 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47023 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00195 * 179.97438 * 12 11 10 14 14 O 1.21613 * 119.99966 * 0.02562 * 13 12 11 15 15 C 1.43207 * 119.99984 * 180.27897 * 13 12 11 16 16 C 9.64549 * 104.16964 * 179.97438 * 2 1 3 17 17 C 9.64209 * 136.59748 * 179.85650 * 7 1 2 18 18 C 1.52996 * 117.49849 * 67.80466 * 17 16 15 19 19 C 1.52999 * 117.50110 * 359.14272 * 17 16 15 20 20 H 0.97000 * 119.99613 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47477 * 59.99648 * 9 7 2 22 22 H 1.08997 * 109.47150 * 299.99542 * 9 7 2 23 23 H 1.09000 * 109.46573 * 60.00376 * 10 9 7 24 24 H 1.08997 * 109.47029 * 300.00003 * 10 9 7 25 25 H 1.08998 * 109.47328 * 60.00273 * 11 10 9 26 26 H 1.08997 * 109.47540 * 300.00020 * 11 10 9 27 27 H 0.97000 * 120.00069 * 0.02562 * 12 11 10 28 28 H 1.09006 * 115.54513 * 213.47418 * 17 16 15 29 29 H 1.08998 * 117.49944 * 0.02562 * 18 17 16 30 30 H 1.09008 * 117.49634 * 145.01839 * 18 17 16 31 31 H 1.08994 * 117.49923 * 214.98032 * 19 17 16 32 32 H 1.09000 * 117.49171 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9829 -7.3713 0.0015 14 8 0.7872 -7.5935 0.0024 15 6 2.9135 -8.4598 0.0069 16 6 3.6763 -9.3520 0.0042 17 6 4.6328 -10.4709 0.0213 18 6 4.7117 -11.3521 -1.2270 19 6 4.0603 -11.8895 0.0498 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5570 -0.8896 22 1 0.6241 -2.5566 0.8903 23 1 2.8718 -3.6043 0.8906 24 1 2.8719 -3.6044 -0.8894 25 1 0.8533 -5.0450 -0.8886 26 1 0.8538 -5.0445 0.8913 27 1 3.3858 -5.9234 0.0002 28 1 5.5577 -10.2903 0.5692 29 1 4.0556 -11.1031 -2.0610 30 1 5.6884 -11.7515 -1.5002 31 1 4.6087 -12.6422 0.6160 32 1 2.9754 -11.9942 0.0563 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628624025.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:07 Heat of formation + Delta-G solvation = 19.975923 kcal Electronic energy + Delta-G solvation = -13338.596546 eV Core-core repulsion = 10879.827996 eV Total energy + Delta-G solvation = -2458.768550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47242 -37.91363 -35.46756 -33.42812 -32.80890 -31.12635 -27.12290 -24.89010 -23.14111 -22.84629 -21.48275 -20.63816 -18.43982 -16.90250 -16.46936 -15.69530 -15.44887 -15.29503 -14.46930 -13.98504 -13.93373 -12.92261 -12.35143 -12.30944 -11.97562 -11.90313 -11.76831 -11.54620 -10.93248 -10.78664 -10.64845 -10.46596 -10.18977 -9.96368 -9.89393 -9.46776 -9.12658 -8.87800 -8.38452 -6.02859 -4.05978 1.46864 2.12393 3.09742 3.26106 3.29602 3.37171 3.40751 3.77115 4.09357 4.36501 4.43836 4.53963 4.67030 5.18786 5.22052 5.33118 5.42595 5.60498 5.65225 5.71296 5.73930 6.12346 6.37020 6.56541 6.77540 6.96701 7.08462 7.58348 7.62540 7.74473 7.95870 8.22415 8.37052 9.00903 9.58415 11.08500 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.067211 B = 0.003537 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.499259 B = 7913.838994 C = 8237.672221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.711 5.711 13 C 0.625 3.375 14 O -0.528 6.528 15 C -0.206 4.206 16 C -0.067 4.067 17 C -0.063 4.063 18 C -0.160 4.160 19 C -0.162 4.162 20 H 0.261 0.739 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.402 0.598 28 H 0.136 0.864 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.619 -19.641 -0.518 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.361 5.361 13 C 0.411 3.589 14 O -0.406 6.406 15 C -0.209 4.209 16 C -0.070 4.070 17 C -0.081 4.081 18 C -0.197 4.197 19 C -0.199 4.199 20 H 0.070 0.930 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.237 0.763 28 H 0.153 0.847 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.576 -19.630 -0.519 21.848 hybrid contribution 0.894 1.116 0.036 1.430 sum 10.470 -18.514 -0.482 21.275 Atomic orbital electron populations 1.69976 1.06064 1.26606 1.50625 1.25033 0.94863 0.99336 0.95266 0.86521 0.80045 0.83726 0.77608 1.19751 1.20994 1.20988 1.21237 0.93047 0.90909 1.50852 0.92564 1.19043 0.93842 0.90796 0.97761 1.21910 0.99839 0.93115 1.01075 1.21769 0.91757 0.84661 1.02476 1.46094 1.11316 1.05150 1.73514 1.14734 0.85754 0.81020 0.77409 1.90859 1.15219 1.84678 1.49826 1.20859 0.97598 0.97459 1.05005 1.21302 0.95592 0.95143 0.94950 1.18900 0.97591 0.86669 1.04920 1.23115 1.03399 1.01440 0.91745 1.23131 1.01779 0.94095 1.00869 0.92957 0.96179 0.96169 0.92573 0.92566 0.91272 0.91255 0.76329 0.84669 0.88060 0.87371 0.87407 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.02 16 12 N -0.71 -10.83 5.55 -62.77 -0.35 -11.18 16 13 C 0.63 10.44 7.65 -14.33 -0.11 10.33 16 14 O -0.53 -10.77 17.09 5.27 0.09 -10.68 16 15 C -0.21 -2.94 13.61 -38.83 -0.53 -3.47 16 16 C -0.07 -0.79 13.47 -37.12 -0.50 -1.29 16 17 C -0.06 -0.49 6.21 -93.40 -0.58 -1.07 16 18 C -0.16 -0.99 10.21 -26.69 -0.27 -1.26 16 19 C -0.16 -1.03 10.21 -26.69 -0.27 -1.30 16 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.40 5.02 8.44 -40.82 -0.34 4.68 16 28 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.11 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 292.68 15.07 4.41 4.41 Total: -1.00 -32.60 292.68 -7.65 -40.24 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.54 Total: -1.70 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.98 Total: -11.47 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.39 Total: -37.26 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.60 -7.65 -40.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628624025.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.219 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds