Wall clock time and date at job start Sun Mar 29 2020 21:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99979 * 3 2 1 6 6 H 1.48496 * 109.47151 * 59.99703 * 3 2 1 7 7 C 1.37872 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00742 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46924 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47023 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00195 * 179.97438 * 12 11 10 14 14 O 1.21613 * 119.99966 * 0.02562 * 13 12 11 15 15 C 1.43207 * 119.99984 * 180.27897 * 13 12 11 16 16 C 9.64549 * 104.16964 * 179.97438 * 2 1 3 17 17 C 9.64209 * 136.59748 * 179.85650 * 7 1 2 18 18 C 1.52996 * 117.49849 * 67.80466 * 17 16 15 19 19 C 1.52999 * 117.50110 * 359.14272 * 17 16 15 20 20 H 0.97000 * 119.99613 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47477 * 59.99648 * 9 7 2 22 22 H 1.08997 * 109.47150 * 299.99542 * 9 7 2 23 23 H 1.09000 * 109.46573 * 60.00376 * 10 9 7 24 24 H 1.08997 * 109.47029 * 300.00003 * 10 9 7 25 25 H 1.08998 * 109.47328 * 60.00273 * 11 10 9 26 26 H 1.08997 * 109.47540 * 300.00020 * 11 10 9 27 27 H 0.97000 * 120.00069 * 0.02562 * 12 11 10 28 28 H 1.09006 * 115.54513 * 213.47418 * 17 16 15 29 29 H 1.08998 * 117.49944 * 0.02562 * 18 17 16 30 30 H 1.09008 * 117.49634 * 145.01839 * 18 17 16 31 31 H 1.08994 * 117.49923 * 214.98032 * 19 17 16 32 32 H 1.09000 * 117.49171 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9829 -7.3713 0.0015 14 8 0.7872 -7.5935 0.0024 15 6 2.9135 -8.4598 0.0069 16 6 3.6763 -9.3520 0.0042 17 6 4.6328 -10.4709 0.0213 18 6 4.7117 -11.3521 -1.2270 19 6 4.0603 -11.8895 0.0498 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5570 -0.8896 22 1 0.6241 -2.5566 0.8903 23 1 2.8718 -3.6043 0.8906 24 1 2.8719 -3.6044 -0.8894 25 1 0.8533 -5.0450 -0.8886 26 1 0.8538 -5.0445 0.8913 27 1 3.3858 -5.9234 0.0002 28 1 5.5577 -10.2903 0.5692 29 1 4.0556 -11.1031 -2.0610 30 1 5.6884 -11.7515 -1.5002 31 1 4.6087 -12.6422 0.6160 32 1 2.9754 -11.9942 0.0563 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628624025.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:07 Heat of formation + Delta-G solvation = -0.830299 kcal Electronic energy + Delta-G solvation = -13339.498771 eV Core-core repulsion = 10879.827996 eV Total energy + Delta-G solvation = -2459.670776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83091 -38.50269 -37.06397 -35.27042 -33.97670 -32.86560 -28.89516 -26.20679 -24.58651 -23.30198 -22.68206 -22.35696 -19.70047 -18.52792 -17.68496 -17.14041 -16.85783 -16.45560 -15.92287 -15.53895 -15.28286 -14.29658 -13.80449 -13.64917 -13.54511 -13.06917 -12.78679 -12.58625 -12.43631 -12.42155 -12.29831 -11.85834 -11.71062 -11.39384 -11.16965 -11.08541 -10.77093 -10.56435 -10.25864 -8.20049 -6.31455 0.36523 1.12553 1.41968 1.42023 1.55355 1.94578 2.26307 2.41993 3.03116 3.13228 3.13988 3.81870 3.95665 4.01937 4.12273 4.17549 4.46640 4.51644 4.76763 4.89245 4.90869 4.96908 5.09160 5.14866 5.21332 5.27067 5.51090 5.69560 5.83701 6.09645 6.21225 6.33755 6.86155 6.96436 7.38263 8.92357 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.067211 B = 0.003537 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.499259 B = 7913.838994 C = 8237.672221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.127 3.873 12 N -0.697 5.697 13 C 0.629 3.371 14 O -0.576 6.576 15 C -0.266 4.266 16 C -0.022 4.022 17 C -0.086 4.086 18 C -0.150 4.150 19 C -0.156 4.156 20 H 0.263 0.737 21 H -0.006 1.006 22 H -0.006 1.006 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.418 0.582 28 H 0.165 0.835 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.611 -20.705 -0.518 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.348 5.348 13 C 0.417 3.583 14 O -0.457 6.457 15 C -0.269 4.269 16 C -0.024 4.024 17 C -0.103 4.103 18 C -0.186 4.186 19 C -0.193 4.193 20 H 0.072 0.928 21 H 0.013 0.987 22 H 0.013 0.987 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.255 0.745 28 H 0.182 0.818 29 H 0.108 0.892 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.618 -20.702 -0.520 24.250 hybrid contribution -0.002 1.330 0.026 1.331 sum 12.616 -19.371 -0.495 23.123 Atomic orbital electron populations 1.70118 1.07943 1.27758 1.51752 1.26026 0.95755 1.03579 0.94787 0.85356 0.79193 0.78600 0.77623 1.18195 1.20580 1.20571 1.21708 0.93773 0.91992 1.50369 0.91521 1.18954 0.94431 0.92812 0.95292 1.21617 0.98532 0.91497 1.02360 1.21413 0.91781 0.84856 1.01528 1.45829 1.11717 1.04259 1.72946 1.14944 0.85534 0.81691 0.76152 1.90821 1.17341 1.85395 1.52172 1.20414 0.99351 0.98644 1.08442 1.22178 0.94328 0.94318 0.91584 1.19380 0.97875 0.85931 1.07160 1.23252 1.04586 0.99917 0.90877 1.23260 1.01438 0.93316 1.01237 0.92790 0.98740 0.98731 0.91189 0.91184 0.92372 0.92355 0.74454 0.81820 0.89184 0.84552 0.84667 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -30.19 9.11 25.60 0.23 -29.95 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.96 5.27 30.60 0.16 -3.80 16 11 C 0.13 4.61 5.67 86.38 0.49 5.10 16 12 N -0.70 -21.19 5.55 -470.75 -2.61 -23.80 16 13 C 0.63 21.46 7.65 85.49 0.65 22.11 16 14 O -0.58 -24.48 17.09 -4.07 -0.07 -24.55 16 15 C -0.27 -7.51 13.61 30.02 0.41 -7.10 16 16 C -0.02 -0.47 13.47 31.13 0.42 -0.05 16 17 C -0.09 -1.06 6.21 -12.60 -0.08 -1.14 16 18 C -0.15 -1.36 10.21 30.62 0.31 -1.04 16 19 C -0.16 -1.49 10.21 30.62 0.31 -1.18 16 20 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 21 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 22 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 23 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.42 9.97 8.44 -92.71 -0.78 9.19 16 28 H 0.16 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.14 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.14 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -72.06 292.68 3.49 -68.57 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.33 Total: 6.37 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 3.52 Total: -15.48 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.33 Total: -80.78 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.07 Total: -24.55 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.06 3.49 -68.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628624025.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.740 kcal (2) G-P(sol) polarization free energy of solvation -72.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds