Wall clock time and date at job start Sun Mar 29 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.31793 * 119.12498 * 269.72967 * 3 2 1 5 5 C 1.32328 * 120.81515 * 179.76153 * 4 3 2 6 6 C 1.38596 * 119.10597 * 0.50375 * 5 4 3 7 7 C 1.50706 * 120.79786 * 179.73053 * 6 5 4 8 8 N 1.46895 * 109.47002 * 270.01830 * 7 6 5 9 9 C 1.46899 * 110.99972 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47337 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99827 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00221 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99520 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99838 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47001 * 60.00567 * 14 12 10 16 16 H 1.48500 * 109.46761 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47421 * 300.00401 * 14 12 10 18 18 C 1.38592 * 118.39880 * 359.75054 * 6 5 4 19 19 N 1.31796 * 119.11883 * 90.00161 * 3 2 1 20 20 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 21 21 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 23 23 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 24 24 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 25 25 H 1.08005 * 120.44661 * 180.27513 * 5 4 3 26 26 H 1.09003 * 109.47481 * 30.02156 * 7 6 5 27 27 H 1.09005 * 109.46919 * 150.02496 * 7 6 5 28 28 H 1.00900 * 111.00175 * 56.05291 * 8 7 6 29 29 H 1.09000 * 109.47205 * 299.99763 * 9 8 7 30 30 H 1.08998 * 109.47599 * 60.00150 * 9 8 7 31 31 H 0.97006 * 119.99215 * 179.97438 * 13 12 10 32 32 H 1.08006 * 120.44459 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2513 2.0238 -1.1513 5 6 2.6879 3.2724 -1.1903 6 6 2.9245 3.9414 0.0002 7 6 3.4278 5.3620 0.0002 8 7 4.8967 5.3610 0.0003 9 6 5.4241 6.7320 0.0009 10 6 6.9306 6.6909 0.0003 11 1 7.4448 5.7412 -0.0009 12 6 7.6524 7.8656 0.0002 13 7 7.0261 9.0221 0.0011 14 14 9.5197 7.8145 0.0002 15 1 9.9953 7.1012 -1.2123 16 1 10.0528 9.2005 0.0007 17 1 9.9954 7.1012 1.2126 18 6 2.6875 3.2725 1.1906 19 7 2.2462 2.0255 1.1514 20 1 -0.3634 0.5140 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 2.8611 3.7623 -2.1372 26 1 3.0648 5.8761 -0.8898 27 1 3.0648 5.8760 0.8903 28 1 5.2580 4.8347 -0.7811 29 1 5.0750 7.2560 -0.8889 30 1 5.0750 7.2553 0.8910 31 1 7.5340 9.8485 0.0014 32 1 2.8610 3.7621 2.1375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651670954.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:37 Heat of formation + Delta-G solvation = 32.391423 kcal Electronic energy + Delta-G solvation = -14049.222104 eV Core-core repulsion = 11623.284681 eV Total energy + Delta-G solvation = -2425.937423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.98481 -36.04592 -34.13030 -33.58019 -32.59644 -30.74516 -27.25049 -25.24459 -24.52632 -23.14947 -21.61123 -21.18394 -17.66376 -16.82009 -16.48260 -15.13839 -14.87917 -14.49061 -14.21960 -13.96104 -13.80931 -13.34782 -13.28716 -12.52440 -12.31236 -11.84616 -11.60385 -11.39587 -11.22634 -10.91867 -10.75974 -10.67641 -10.53344 -10.02922 -9.33577 -9.11210 -9.08306 -8.53542 -7.45775 -6.09053 -4.11556 1.00046 1.20665 3.30809 3.34753 3.37978 3.81502 3.95134 4.23919 4.39083 4.77965 4.93919 5.02181 5.08797 5.11300 5.18186 5.27081 5.44988 5.64018 5.70484 5.73372 5.91535 6.00239 6.05680 6.21783 6.53135 7.07766 7.11136 7.30524 7.69274 8.03221 8.18903 8.23909 8.47687 8.96731 9.53693 11.01915 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.066513 B = 0.004566 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.866811 B = 6130.505812 C = 6251.465636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C 0.303 3.697 4 N -0.519 5.519 5 C 0.149 3.851 6 C -0.175 4.175 7 C 0.103 3.897 8 N -0.684 5.684 9 C 0.194 3.806 10 C -0.518 4.518 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.901 3.099 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.166 3.834 19 N -0.519 5.519 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.165 0.835 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.330 0.670 29 H -0.011 1.011 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 -12.826 -0.737 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C 0.035 3.965 4 N -0.233 5.233 5 C -0.017 4.017 6 C -0.179 4.179 7 C -0.028 4.028 8 N -0.315 5.315 9 C 0.068 3.932 10 C -0.556 4.556 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.728 3.272 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.001 4.001 19 N -0.233 5.233 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.182 0.818 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.146 0.854 29 H 0.007 0.993 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.542 -13.612 -0.046 17.847 hybrid contribution 1.244 1.446 -0.915 2.115 sum -10.298 -12.167 -0.961 15.969 Atomic orbital electron populations 1.21679 0.93856 1.02200 1.02329 1.20290 0.96538 0.88439 1.03934 1.23126 0.92363 0.97206 0.83777 1.68206 1.14076 1.10436 1.30533 1.23148 0.90634 0.89490 0.98463 1.21823 1.00860 0.99931 0.95281 1.20739 0.91481 0.89182 1.01408 1.60773 1.02591 1.19035 1.49110 1.19597 0.95078 0.82512 0.96049 1.21120 0.90934 0.92718 1.50836 0.91997 1.24983 0.98982 0.95319 0.95185 1.69948 1.35789 0.97336 1.50588 0.86519 0.85003 0.76943 0.78717 1.20225 1.21277 1.20102 1.23166 0.89180 0.89028 0.98696 1.68243 1.14033 1.10582 1.30409 0.92435 0.91660 0.92382 0.89453 0.89403 0.81815 0.94680 0.90205 0.85373 0.99314 0.95139 0.92759 0.81355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.05 -0.56 6.37 -27.88 -0.18 -0.74 16 3 C 0.30 4.28 6.90 -157.19 -1.08 3.20 16 4 N -0.52 -7.64 10.33 -10.72 -0.11 -7.75 16 5 C 0.15 2.11 11.01 -17.21 -0.19 1.92 16 6 C -0.17 -2.59 5.43 -104.36 -0.57 -3.15 16 7 C 0.10 1.68 5.86 -4.98 -0.03 1.65 16 8 N -0.68 -14.05 6.48 -116.34 -0.75 -14.80 16 9 C 0.19 4.91 5.44 -4.97 -0.03 4.88 16 10 C -0.52 -14.44 9.32 -34.44 -0.32 -14.76 16 11 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 14 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.17 2.42 11.01 -17.21 -0.19 2.23 16 19 N -0.52 -7.76 10.33 -10.72 -0.11 -7.87 16 20 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.16 1.97 8.06 -52.48 -0.42 1.54 16 26 H 0.04 0.56 8.10 -51.93 -0.42 0.13 16 27 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 28 H 0.33 6.57 8.72 -39.29 -0.34 6.23 16 29 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.17 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -30.60 282.13 -7.86 -38.46 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.53 Total: 1.07 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.31 Total: -4.15 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.24 Total: -56.09 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.60 -7.86 -38.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651670954.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.851 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds