Wall clock time and date at job start Sun Mar 29 2020 21:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99848 * 2 1 4 4 O 1.21579 * 120.00446 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99644 * 179.97438 * 3 2 1 6 6 C 1.39459 * 119.99976 * 185.06129 * 5 3 2 7 7 C 1.38637 * 119.65129 * 185.36363 * 6 5 3 8 8 C 1.40818 * 118.67649 * 179.72604 * 7 6 5 9 9 C 1.41545 * 120.99655 * 180.25160 * 8 7 6 10 10 H 1.08007 * 119.99872 * 153.82079 * 9 8 7 11 11 C 1.40030 * 120.00380 * 333.82071 * 9 8 7 12 12 N 1.30746 * 119.99781 * 350.11000 * 11 9 8 13 13 Si 1.86793 * 120.00128 * 170.10466 * 11 9 8 14 14 H 1.48500 * 109.47493 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47016 * 120.00100 * 13 11 9 16 16 H 1.48500 * 109.47507 * 240.00020 * 13 11 9 17 17 C 1.41158 * 118.00772 * 0.27436 * 8 7 6 18 18 C 1.36596 * 119.12792 * 359.97438 * 17 8 7 19 19 N 1.32067 * 121.25611 * 0.02852 * 18 17 8 20 20 H 1.08999 * 109.47475 * 59.99739 * 1 2 3 21 21 H 1.09006 * 109.47420 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47313 * 300.00132 * 1 2 3 23 23 H 0.96994 * 120.00011 * 180.02562 * 2 1 3 24 24 H 0.96997 * 119.99984 * 5.06323 * 5 3 2 25 25 H 1.08005 * 120.66128 * 359.97438 * 7 6 5 26 26 H 0.96998 * 120.00044 * 180.02562 * 12 11 9 27 27 H 1.08002 * 120.44204 * 179.97438 * 17 8 7 28 28 H 1.07994 * 119.37217 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.1839 2.3702 0.1071 7 6 5.5658 2.3743 -0.0051 8 6 6.2486 3.6013 0.0999 9 6 7.6583 3.6630 -0.0124 10 1 8.1338 4.5722 -0.3498 11 6 8.4363 2.5454 0.3140 12 7 7.8865 1.5155 0.9026 13 14 10.2595 2.5260 -0.0917 14 1 10.6337 3.8029 -0.7510 15 1 11.0434 2.3673 1.1596 16 1 10.5513 1.3925 -1.0056 17 6 5.4853 4.7679 0.3210 18 6 4.1271 4.6644 0.4232 19 7 3.5192 3.4965 0.3197 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.9500 -0.8400 -0.0004 24 1 3.9716 0.3304 -0.0732 25 1 6.1074 1.4552 -0.1737 26 1 8.4254 0.7415 1.1290 27 1 5.9686 5.7298 0.4082 28 1 3.5392 5.5543 0.5928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673548727.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:32 Heat of formation + Delta-G solvation = 10.347198 kcal Electronic energy + Delta-G solvation = -14432.953325 eV Core-core repulsion = 11870.226899 eV Total energy + Delta-G solvation = -2562.726426 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.69788 -37.98367 -34.51121 -33.92983 -33.68285 -30.48085 -28.79670 -26.20126 -25.87956 -21.95410 -21.56086 -20.05605 -18.18594 -17.62482 -16.13088 -15.31038 -15.04006 -14.50799 -14.25195 -14.15675 -13.47923 -13.12926 -12.82377 -12.58081 -12.14380 -12.08614 -11.42728 -11.17640 -10.89618 -10.26016 -10.09218 -9.73407 -9.56863 -9.37945 -8.79068 -7.95000 -7.69870 -7.00136 -6.72517 -4.61099 2.71407 2.81692 3.02540 3.08073 3.15367 3.25849 3.86275 3.90835 4.65410 4.73669 5.27330 5.66296 5.72600 5.86992 6.00221 6.56836 6.64083 6.74527 6.82634 6.97327 7.15937 7.31875 7.45680 7.51973 7.89667 8.13880 8.42822 8.48915 8.75093 8.78186 9.21516 9.75521 10.11191 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.044482 B = 0.007275 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.310117 B = 3848.041447 C = 4412.819498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.760 5.760 3 C 0.689 3.311 4 O -0.535 6.535 5 N -0.669 5.669 6 C 0.354 3.646 7 C -0.243 4.243 8 C 0.143 3.857 9 C -0.454 4.454 10 H 0.082 0.918 11 C 0.075 3.925 12 N -0.796 5.796 13 Si 0.915 3.085 14 H -0.260 1.260 15 H -0.274 1.274 16 H -0.272 1.272 17 C -0.283 4.283 18 C 0.119 3.881 19 N -0.554 5.554 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.392 0.608 24 H 0.404 0.596 25 H 0.133 0.867 26 H 0.280 0.720 27 H 0.102 0.898 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 -6.356 -1.438 7.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.418 5.418 3 C 0.388 3.612 4 O -0.406 6.406 5 N -0.317 5.317 6 C 0.128 3.872 7 C -0.269 4.269 8 C 0.134 3.866 9 C -0.485 4.485 10 H 0.100 0.900 11 C -0.143 4.143 12 N -0.422 5.422 13 Si 0.739 3.261 14 H -0.184 1.184 15 H -0.199 1.199 16 H -0.197 1.197 17 C -0.307 4.307 18 C -0.035 4.035 19 N -0.273 5.273 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.225 0.775 24 H 0.239 0.761 25 H 0.150 0.850 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.634 -5.641 -1.251 8.070 hybrid contribution 2.243 -0.973 -0.142 2.449 sum -3.391 -6.614 -1.394 7.563 Atomic orbital electron populations 1.21282 0.78772 1.01231 1.02043 1.45035 1.07386 1.07225 1.82148 1.16139 0.81995 0.84214 0.78805 1.91001 1.66850 1.29331 1.53439 1.42566 1.04661 1.08613 1.75816 1.17985 0.87841 0.84765 0.96657 1.21629 0.90059 1.01101 1.14107 1.17584 0.93351 0.90028 0.85604 1.19619 0.90829 0.98697 1.39390 0.90015 1.25950 1.01482 0.94557 0.92318 1.69758 1.38122 1.05342 1.28993 0.86157 0.81436 0.79509 0.79007 1.18362 1.19913 1.19727 1.21691 0.94873 0.98963 1.15125 1.21478 0.91869 0.93732 0.96432 1.67184 1.39458 0.97207 1.23402 0.92726 0.91199 0.92672 0.77529 0.76129 0.84950 0.90929 0.87999 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.31 10.70 59.85 0.64 1.95 15 2 N -0.76 -10.74 5.72 -72.07 -0.41 -11.15 15 3 C 0.69 13.87 8.51 -86.92 -0.74 13.13 15 4 O -0.54 -13.23 14.64 5.30 0.08 -13.15 15 5 N -0.67 -13.64 5.40 -15.86 -0.09 -13.72 15 6 C 0.35 8.85 7.41 -154.67 -1.15 7.71 15 7 C -0.24 -6.27 8.62 -38.46 -0.33 -6.60 15 8 C 0.14 3.80 5.60 -106.55 -0.60 3.21 15 9 C -0.45 -11.75 9.14 -37.65 -0.34 -12.10 15 10 H 0.08 2.03 7.87 -52.48 -0.41 1.62 15 11 C 0.07 1.81 5.31 -17.34 -0.09 1.72 15 12 N -0.80 -19.63 10.70 55.55 0.59 -19.04 15 13 Si 0.91 18.02 29.57 -169.99 -5.03 12.99 15 14 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 15 H -0.27 -5.34 7.11 56.52 0.40 -4.93 15 16 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 17 C -0.28 -7.06 9.85 -39.07 -0.38 -7.44 15 18 C 0.12 2.93 11.10 -18.04 -0.20 2.73 15 19 N -0.55 -14.67 7.90 -12.75 -0.10 -14.77 15 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.05 0.70 8.14 -51.92 -0.42 0.28 15 23 H 0.39 4.13 8.85 -40.82 -0.36 3.77 15 24 H 0.40 6.69 8.71 -40.82 -0.36 6.33 15 25 H 0.13 3.37 6.11 -52.48 -0.32 3.05 15 26 H 0.28 6.22 8.29 -40.82 -0.34 5.88 15 27 H 0.10 2.32 8.06 -52.49 -0.42 1.90 15 28 H 0.12 2.63 8.06 -52.49 -0.42 2.21 15 LS Contribution 251.86 15.07 3.80 3.80 Total: -1.00 -32.74 251.86 -7.05 -39.79 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -2.70 Total: 10.95 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -3.19 Total: 4.32 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.00 Total: -58.69 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.74 -7.05 -39.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673548727.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.138 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds