Wall clock time and date at job start Sun Mar 29 2020 21:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99848 * 2 1 4 4 O 1.21579 * 120.00446 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99644 * 179.97438 * 3 2 1 6 6 C 1.39459 * 119.99976 * 185.06129 * 5 3 2 7 7 C 1.38637 * 119.65129 * 185.36363 * 6 5 3 8 8 C 1.40818 * 118.67649 * 179.72604 * 7 6 5 9 9 C 1.41545 * 120.99655 * 180.25160 * 8 7 6 10 10 H 1.08007 * 119.99872 * 153.82079 * 9 8 7 11 11 C 1.40030 * 120.00380 * 333.82071 * 9 8 7 12 12 N 1.30746 * 119.99781 * 350.11000 * 11 9 8 13 13 Si 1.86793 * 120.00128 * 170.10466 * 11 9 8 14 14 H 1.48500 * 109.47493 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47016 * 120.00100 * 13 11 9 16 16 H 1.48500 * 109.47507 * 240.00020 * 13 11 9 17 17 C 1.41158 * 118.00772 * 0.27436 * 8 7 6 18 18 C 1.36596 * 119.12792 * 359.97438 * 17 8 7 19 19 N 1.32067 * 121.25611 * 0.02852 * 18 17 8 20 20 H 1.08999 * 109.47475 * 59.99739 * 1 2 3 21 21 H 1.09006 * 109.47420 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47313 * 300.00132 * 1 2 3 23 23 H 0.96994 * 120.00011 * 180.02562 * 2 1 3 24 24 H 0.96997 * 119.99984 * 5.06323 * 5 3 2 25 25 H 1.08005 * 120.66128 * 359.97438 * 7 6 5 26 26 H 0.96998 * 120.00044 * 180.02562 * 12 11 9 27 27 H 1.08002 * 120.44204 * 179.97438 * 17 8 7 28 28 H 1.07994 * 119.37217 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.1839 2.3702 0.1071 7 6 5.5658 2.3743 -0.0051 8 6 6.2486 3.6013 0.0999 9 6 7.6583 3.6630 -0.0124 10 1 8.1338 4.5722 -0.3498 11 6 8.4363 2.5454 0.3140 12 7 7.8865 1.5155 0.9026 13 14 10.2595 2.5260 -0.0917 14 1 10.6337 3.8029 -0.7510 15 1 11.0434 2.3673 1.1596 16 1 10.5513 1.3925 -1.0056 17 6 5.4853 4.7679 0.3210 18 6 4.1271 4.6644 0.4232 19 7 3.5192 3.4965 0.3197 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.9500 -0.8400 -0.0004 24 1 3.9716 0.3304 -0.0732 25 1 6.1074 1.4552 -0.1737 26 1 8.4254 0.7415 1.1290 27 1 5.9686 5.7298 0.4082 28 1 3.5392 5.5543 0.5928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673548727.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:31 Heat of formation + Delta-G solvation = -13.101903 kcal Electronic energy + Delta-G solvation = -14433.970155 eV Core-core repulsion = 11870.226899 eV Total energy + Delta-G solvation = -2563.743256 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36087 -39.77620 -36.21221 -35.48362 -35.41936 -32.41042 -30.57202 -27.94273 -27.29976 -23.82995 -23.30292 -21.70228 -19.77436 -19.39447 -17.86798 -17.05399 -16.54143 -16.05741 -15.97658 -15.94331 -15.09365 -14.64617 -14.60819 -14.32113 -13.76825 -13.14761 -12.99888 -12.85740 -12.68893 -12.08706 -11.85311 -11.51555 -11.31741 -11.18358 -10.09605 -9.90541 -9.62308 -8.84579 -8.56699 -6.57025 0.83850 1.01210 1.42787 1.56904 1.57541 1.71906 2.21787 2.27990 2.85833 3.29115 3.76998 4.15798 4.48615 4.68907 4.72947 4.85665 4.93127 4.98323 5.11527 5.25935 5.49739 5.53104 5.66507 5.86732 6.00605 6.28744 6.57680 6.80735 6.84514 7.02327 7.63073 7.90401 8.30575 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.044482 B = 0.007275 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.310117 B = 3848.041447 C = 4412.819498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.736 5.736 3 C 0.684 3.316 4 O -0.585 6.585 5 N -0.661 5.661 6 C 0.350 3.650 7 C -0.259 4.259 8 C 0.114 3.886 9 C -0.482 4.482 10 H 0.083 0.917 11 C 0.036 3.964 12 N -0.817 5.817 13 Si 0.991 3.009 14 H -0.259 1.259 15 H -0.266 1.266 16 H -0.262 1.262 17 C -0.296 4.296 18 C 0.112 3.888 19 N -0.582 5.582 20 H 0.045 0.955 21 H 0.121 0.879 22 H 0.043 0.957 23 H 0.414 0.586 24 H 0.421 0.579 25 H 0.131 0.869 26 H 0.291 0.709 27 H 0.117 0.883 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 -7.766 -1.579 8.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.395 5.395 3 C 0.383 3.617 4 O -0.461 6.461 5 N -0.311 5.311 6 C 0.122 3.878 7 C -0.285 4.285 8 C 0.105 3.895 9 C -0.513 4.513 10 H 0.102 0.898 11 C -0.180 4.180 12 N -0.443 5.443 13 Si 0.811 3.189 14 H -0.183 1.183 15 H -0.191 1.191 16 H -0.186 1.186 17 C -0.319 4.319 18 C -0.041 4.041 19 N -0.301 5.301 20 H 0.064 0.936 21 H 0.139 0.861 22 H 0.062 0.938 23 H 0.250 0.750 24 H 0.258 0.742 25 H 0.148 0.852 26 H 0.102 0.898 27 H 0.135 0.865 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.031 -7.134 -1.390 8.839 hybrid contribution 1.988 -0.602 -0.074 2.079 sum -3.042 -7.735 -1.464 8.440 Atomic orbital electron populations 1.21546 0.76843 1.04255 1.01069 1.44879 1.08400 1.06202 1.79975 1.16401 0.81672 0.85178 0.78443 1.90962 1.67666 1.31681 1.55741 1.42449 1.05123 1.08029 1.75465 1.18212 0.88092 0.85807 0.95661 1.21613 0.90476 1.00907 1.15550 1.18024 0.94318 0.90975 0.86148 1.19905 0.91030 0.99854 1.40538 0.89839 1.26828 1.06119 0.93615 0.91445 1.69787 1.40235 1.05884 1.28415 0.85017 0.75177 0.79674 0.78986 1.18258 1.19124 1.18634 1.21881 0.95138 0.99338 1.15591 1.21924 0.92206 0.94347 0.95606 1.67307 1.40151 0.98044 1.24648 0.93595 0.86113 0.93835 0.75040 0.74178 0.85173 0.89773 0.86513 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.26 10.70 127.77 1.37 3.62 15 2 N -0.74 -19.29 5.72 -500.18 -2.86 -22.15 15 3 C 0.68 27.13 8.51 179.05 1.52 28.66 15 4 O -0.59 -29.16 14.64 -3.97 -0.06 -29.22 15 5 N -0.66 -26.79 5.40 -322.36 -1.74 -28.53 15 6 C 0.35 17.72 7.41 132.76 0.98 18.70 15 7 C -0.26 -13.60 8.62 23.00 0.20 -13.40 15 8 C 0.11 6.16 5.60 -21.12 -0.12 6.04 15 9 C -0.48 -25.13 9.14 23.52 0.21 -24.91 15 10 H 0.08 4.17 7.87 -2.91 -0.02 4.14 15 11 C 0.04 1.72 5.31 85.29 0.45 2.17 15 12 N -0.82 -39.90 10.70 21.84 0.23 -39.66 15 13 Si 0.99 35.93 29.57 68.60 2.03 37.96 15 14 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 15 H -0.27 -9.31 7.11 99.48 0.71 -8.60 15 16 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 17 C -0.30 -14.97 9.85 22.60 0.22 -14.75 15 18 C 0.11 5.61 11.10 84.27 0.94 6.54 15 19 N -0.58 -31.26 7.90 -194.27 -1.53 -32.79 15 20 H 0.05 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.12 1.35 8.14 -2.38 -0.02 1.33 15 22 H 0.04 1.04 8.14 -2.38 -0.02 1.03 15 23 H 0.41 7.48 8.85 -92.71 -0.82 6.66 15 24 H 0.42 13.58 8.71 -92.71 -0.81 12.77 15 25 H 0.13 6.72 6.11 -2.91 -0.02 6.71 15 26 H 0.29 12.63 8.29 -92.71 -0.77 11.86 15 27 H 0.12 5.37 8.06 -2.91 -0.02 5.34 15 28 H 0.15 6.35 8.06 -2.91 -0.02 6.32 15 Total: -1.00 -71.42 251.86 1.43 -69.99 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.42 Total: 31.73 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.78 Total: 12.68 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.90 Total: -123.13 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Total: -71.42 1.43 -69.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673548727.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.884 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds