Wall clock time and date at job start Sun Mar 29 2020 22:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35681 * 116.99914 * 2 1 4 4 N 1.32273 * 119.68258 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64673 * 180.02562 * 4 3 2 6 6 C 1.38096 * 120.83446 * 0.02562 * 5 4 3 7 7 C 1.38781 * 119.28189 * 0.02562 * 6 5 4 8 8 C 1.38420 * 118.48943 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.44158 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47314 * 259.97568 * 9 8 7 11 11 C 1.46901 * 111.00344 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47311 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00062 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99876 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00253 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99824 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47094 * 60.00210 * 16 14 12 18 18 H 1.48508 * 109.46919 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47030 * 299.99691 * 16 14 12 20 20 H 1.09001 * 109.46468 * 60.00950 * 1 2 3 21 21 H 1.08999 * 109.47031 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47224 * 300.00861 * 1 2 3 23 23 H 1.08007 * 119.58383 * 179.72800 * 5 4 3 24 24 H 1.07998 * 120.35439 * 179.97438 * 6 5 4 25 25 H 1.08009 * 120.75181 * 180.02562 * 7 6 5 26 26 H 1.09004 * 109.47506 * 19.98342 * 9 8 7 27 27 H 1.09004 * 109.46965 * 139.98036 * 9 8 7 28 28 H 1.00898 * 110.99962 * 303.95535 * 10 9 8 29 29 H 1.09001 * 109.47051 * 300.00620 * 11 10 9 30 30 H 1.09006 * 109.47104 * 59.99872 * 11 10 9 31 31 H 0.97003 * 120.00115 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3184 2.3143 -0.0005 5 6 1.8768 3.5096 -0.0010 6 6 3.2506 3.6492 -0.0016 7 6 4.0483 2.5135 -0.0021 8 6 3.4322 1.2740 -0.0016 9 6 4.2558 0.0119 -0.0015 10 7 4.3210 -0.5303 -1.3652 11 6 5.1173 -1.7641 -1.4037 12 6 5.1621 -2.2893 -2.8155 13 1 4.6498 -1.7598 -3.6051 14 6 5.8561 -3.4464 -3.0989 15 7 6.4795 -4.0916 -2.1372 16 14 5.9109 -4.0979 -4.8488 17 1 6.5308 -3.0813 -5.7362 18 1 6.7151 -5.3458 -4.8874 19 1 4.5301 -4.3848 -5.3136 20 1 -0.3632 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 1.2514 4.3902 -0.0059 24 1 3.6994 4.6315 -0.0024 25 1 5.1253 2.5950 -0.0022 26 1 5.2634 0.2355 0.3492 27 1 3.7955 -0.7223 0.6597 28 1 3.3961 -0.6855 -1.7372 29 1 6.1309 -1.5532 -1.0626 30 1 4.6627 -2.5105 -0.7522 31 1 6.9681 -4.9055 -2.3367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037485468.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:09 Heat of formation + Delta-G solvation = -29.429451 kcal Electronic energy + Delta-G solvation = -14601.053603 eV Core-core repulsion = 12074.716765 eV Total energy + Delta-G solvation = -2526.336839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63531 -38.80704 -37.28058 -34.87828 -33.27790 -31.84668 -29.03624 -28.16133 -26.21178 -23.93058 -23.59493 -22.69091 -19.30390 -18.63560 -18.01696 -17.04877 -16.86879 -16.42090 -15.90806 -15.42721 -15.26842 -15.01611 -14.40162 -14.22025 -13.93189 -13.46127 -13.10401 -12.98690 -12.71442 -12.64014 -12.35214 -12.15531 -12.02379 -11.36719 -10.75185 -10.65479 -10.57027 -9.42522 -9.12278 -8.22877 -6.34650 0.19170 0.36266 1.40695 1.44722 1.52880 2.20235 2.39939 2.81270 3.09931 3.37344 3.73630 3.89306 4.02732 4.13463 4.35469 4.42132 4.43113 4.59732 4.65667 4.74437 4.82378 5.05615 5.14522 5.24593 5.37636 5.57783 5.59377 5.99407 6.28723 6.40847 6.64359 6.83951 6.89473 7.35924 8.88583 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037507 B = 0.006059 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.350069 B = 4619.829583 C = 4915.677270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.329 6.329 3 C 0.303 3.697 4 N -0.555 5.555 5 C 0.126 3.874 6 C -0.198 4.198 7 C -0.034 4.034 8 C -0.163 4.163 9 C 0.113 3.887 10 N -0.679 5.679 11 C 0.209 3.791 12 C -0.539 4.539 13 H 0.061 0.939 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.975 3.025 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.268 1.268 20 H 0.058 0.942 21 H 0.111 0.889 22 H 0.062 0.938 23 H 0.194 0.806 24 H 0.175 0.825 25 H 0.155 0.845 26 H 0.078 0.922 27 H 0.020 0.980 28 H 0.330 0.670 29 H 0.006 0.994 30 H -0.041 1.041 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.473 14.603 5.009 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.237 6.237 3 C 0.125 3.875 4 N -0.279 5.279 5 C -0.030 4.030 6 C -0.218 4.218 7 C -0.060 4.060 8 C -0.166 4.166 9 C -0.017 4.017 10 N -0.309 5.309 11 C 0.081 3.919 12 C -0.577 4.577 13 H 0.080 0.920 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.799 3.201 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.193 1.193 20 H 0.076 0.924 21 H 0.129 0.871 22 H 0.081 0.919 23 H 0.211 0.789 24 H 0.192 0.808 25 H 0.173 0.827 26 H 0.096 0.904 27 H 0.039 0.961 28 H 0.147 0.853 29 H 0.024 0.976 30 H -0.023 1.023 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.645 14.480 4.871 18.067 hybrid contribution 0.245 -1.254 -0.146 1.286 sum -9.400 13.226 4.725 16.900 Atomic orbital electron populations 1.23000 0.76011 1.04140 1.02349 1.86278 1.24374 1.25193 1.87821 1.19847 0.89187 0.85112 0.93387 1.67352 1.41109 0.99307 1.20138 1.23084 0.94013 0.93662 0.92208 1.22353 0.94503 1.00514 1.04425 1.21676 1.01892 0.90280 0.92117 1.19964 0.91067 0.97182 1.08385 1.20577 0.98330 0.92256 0.90531 1.60709 1.18890 1.31688 1.19582 1.19225 0.91977 0.84977 0.95686 1.21478 1.32800 1.08695 0.94696 0.92045 1.25959 0.94643 0.96670 1.02295 1.70084 1.34306 1.18421 1.34493 0.85361 0.78521 0.77573 0.78678 1.19207 1.20485 1.19255 0.92363 0.87067 0.91927 0.78882 0.80765 0.82695 0.90386 0.96136 0.85331 0.97608 1.02314 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.38 113.37 1.18 2.17 16 2 O -0.33 -11.23 9.70 -89.99 -0.87 -12.10 16 3 C 0.30 10.02 7.47 84.78 0.63 10.65 16 4 N -0.56 -15.70 9.22 -308.93 -2.85 -18.55 16 5 C 0.13 2.63 11.18 84.64 0.95 3.57 16 6 C -0.20 -3.86 10.11 22.37 0.23 -3.63 16 7 C -0.03 -0.87 9.81 22.44 0.22 -0.65 16 8 C -0.16 -5.40 5.42 -19.67 -0.11 -5.51 16 9 C 0.11 4.44 5.50 85.56 0.47 4.91 16 10 N -0.68 -31.90 6.48 -521.98 -3.38 -35.28 16 11 C 0.21 11.78 5.44 85.56 0.47 12.25 16 12 C -0.54 -31.96 9.32 25.60 0.24 -31.72 16 13 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 16 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 21 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 23 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 24 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 25 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 26 H 0.08 2.92 8.03 -2.38 -0.02 2.90 16 27 H 0.02 0.86 7.87 -2.39 -0.02 0.84 16 28 H 0.33 15.59 8.68 -89.70 -0.78 14.81 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H -0.04 -2.48 8.14 -2.38 -0.02 -2.50 16 31 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -70.55 275.13 0.29 -70.26 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.34 Total: 13.01 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 4.73 Total: -7.34 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -5.94 Total: -111.01 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.87 Total: -12.10 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.55 0.29 -70.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037485468.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.831 kcal (2) G-P(sol) polarization free energy of solvation -70.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds