Wall clock time and date at job start Sun Mar 29 2020 22:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47009 * 2 1 4 4 C 1.52999 * 109.46883 * 240.00121 * 2 1 3 5 5 C 1.47200 * 109.47379 * 174.99637 * 4 2 1 6 6 N 3.43551 * 154.82299 * 248.43667 * 2 1 3 7 7 N 1.46892 * 109.47324 * 120.00028 * 2 1 3 8 8 C 1.46902 * 111.00009 * 58.95161 * 7 2 1 9 9 C 1.46902 * 111.00307 * 294.99892 * 7 2 1 10 10 C 1.52998 * 109.47451 * 196.38051 * 9 7 2 11 11 C 1.50704 * 115.55019 * 39.78292 * 10 9 7 12 12 H 1.07999 * 119.99764 * 264.46009 * 11 10 9 13 13 C 1.37876 * 119.99879 * 84.44945 * 11 10 9 14 14 N 1.31512 * 120.00017 * 4.89638 * 13 11 10 15 15 Si 1.86799 * 120.00252 * 184.88839 * 13 11 10 16 16 H 1.48501 * 109.46872 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47486 * 120.00341 * 15 13 11 18 18 H 1.48500 * 109.47563 * 240.00733 * 15 13 11 19 19 C 1.52998 * 117.50163 * 254.07625 * 10 9 7 20 20 C 1.52993 * 60.00042 * 252.50963 * 19 10 9 21 21 H 1.08997 * 109.47435 * 59.99874 * 1 2 3 22 22 H 1.08997 * 109.47009 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46824 * 299.99847 * 1 2 3 24 24 H 1.08996 * 109.47198 * 295.00044 * 4 2 1 25 25 H 1.09005 * 109.47068 * 54.99742 * 4 2 1 26 26 H 1.09002 * 109.47189 * 55.39852 * 8 7 2 27 27 H 1.08997 * 109.47375 * 175.39182 * 8 7 2 28 28 H 1.08997 * 109.47566 * 295.39655 * 8 7 2 29 29 H 1.08999 * 109.46824 * 316.38165 * 9 7 2 30 30 H 1.09000 * 109.46999 * 76.38202 * 9 7 2 31 31 H 0.97004 * 120.00270 * 184.99479 * 14 13 11 32 32 H 1.09000 * 117.49672 * 359.97438 * 19 10 9 33 33 H 1.08994 * 117.50005 * 145.01654 * 19 10 9 34 34 H 1.09001 * 117.49740 * 252.51313 * 20 19 10 35 35 H 1.09003 * 117.52031 * 107.47680 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5069 -0.6173 -1.3114 6 7 4.6391 -0.5372 -1.3592 7 7 2.0197 -0.6925 1.1993 8 6 1.5283 -2.0761 1.2459 9 6 1.6488 0.0392 2.4180 10 6 2.4959 -0.4599 3.5903 11 6 3.9420 -0.7420 3.2735 12 1 4.2554 -1.7463 3.0297 13 6 4.8649 0.2822 3.2947 14 7 4.5033 1.4851 3.6844 15 14 6.6287 -0.0388 2.7701 16 1 6.7772 -1.4636 2.3787 17 1 6.9672 0.8296 1.6140 18 1 7.5439 0.2624 3.9001 19 6 1.8118 -1.3543 4.6260 20 6 2.1716 0.0898 4.9808 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7516 -1.7714 -1.2056 25 1 1.6052 -0.2617 -2.1370 26 1 1.8067 -2.5917 0.3268 27 1 1.9707 -2.5903 2.0991 28 1 0.4430 -2.0731 1.3464 29 1 1.8251 1.1046 2.2700 30 1 0.5938 -0.1279 2.6352 31 1 5.1322 2.2218 3.6308 32 1 0.7580 -1.5868 4.4726 33 1 2.4075 -2.1471 5.0784 34 1 3.0041 0.2471 5.6665 35 1 1.3549 0.8073 5.0603 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:52 Heat of formation + Delta-G solvation = 57.784094 kcal Electronic energy + Delta-G solvation = -15778.134742 eV Core-core repulsion = 13391.412861 eV Total energy + Delta-G solvation = -2386.721881 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.51954 -36.33985 -35.30623 -31.73117 -31.25664 -28.05012 -26.74748 -25.31178 -23.87543 -20.99978 -19.81288 -18.81935 -17.17326 -16.08796 -15.61967 -14.54832 -14.29237 -14.12030 -13.50075 -13.37932 -13.02683 -12.87733 -12.47673 -12.01811 -11.78760 -11.45821 -11.39288 -11.28765 -10.93650 -10.84998 -10.76823 -10.52066 -10.37818 -10.32755 -10.00515 -9.30771 -8.82916 -8.19991 -7.92543 -7.37183 -5.83888 -3.83868 3.33432 3.37186 3.45153 3.54419 3.59229 4.42600 4.58500 4.64816 5.12333 5.35703 5.42178 5.48056 5.51620 5.59833 5.62396 5.86666 5.98955 6.02310 6.11949 6.21795 6.35594 6.40411 6.54476 6.59874 6.66247 6.79689 7.00775 7.18958 7.47710 7.60316 7.89752 8.03170 8.08488 8.18181 8.63908 9.12397 9.79455 11.25893 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.013661 C = 0.009350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.011234 B = 2049.168857 C = 2993.791414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.087 0.913 4 C -0.019 4.019 5 C 0.218 3.782 6 N -0.438 5.438 7 N -0.504 5.504 8 C 0.026 3.974 9 C 0.107 3.893 10 C 0.051 3.949 11 C -0.453 4.453 12 H 0.054 0.946 13 C 0.074 3.926 14 N -0.889 5.889 15 Si 0.880 3.120 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.290 1.290 19 C -0.219 4.219 20 C -0.154 4.154 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.015 0.985 29 H 0.067 0.933 30 H 0.006 0.994 31 H 0.254 0.746 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 -3.355 -7.222 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.105 0.895 4 C -0.059 4.059 5 C -0.100 4.100 6 N -0.115 5.115 7 N -0.226 5.226 8 C -0.122 4.122 9 C -0.020 4.020 10 C 0.050 3.950 11 C -0.491 4.491 12 H 0.072 0.928 13 C -0.127 4.127 14 N -0.527 5.527 15 Si 0.708 3.292 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.217 1.217 19 C -0.256 4.256 20 C -0.192 4.192 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.034 0.966 29 H 0.086 0.914 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.071 -3.088 -7.236 11.271 hybrid contribution -0.356 -0.005 -0.148 0.386 sum -8.427 -3.092 -7.385 11.624 Atomic orbital electron populations 1.22469 0.97321 1.02235 1.02313 1.21730 0.92321 0.98945 0.90117 0.89484 1.19409 0.82826 1.03855 0.99799 1.28750 0.94960 0.93563 0.92750 1.81164 1.13020 1.08283 1.09049 1.62015 1.58219 1.01345 1.01025 1.22399 0.96482 0.91122 1.02197 1.21632 0.93423 0.97471 0.89477 1.18848 0.94229 0.96322 0.85611 1.20160 0.89423 0.94345 1.45157 0.92754 1.24784 0.97737 0.95475 0.94673 1.70003 1.35445 1.00118 1.47163 0.86734 0.85935 0.78564 0.77937 1.19967 1.21077 1.21690 1.23072 0.98017 0.94568 1.09925 1.22482 1.00744 0.92938 1.03016 0.92381 0.92164 0.91990 0.87736 0.87807 0.92729 0.90650 0.96625 0.91419 0.97592 0.93600 0.92258 0.90770 0.89812 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 8.52 37.16 0.32 -1.75 16 2 C 0.08 1.14 2.30 -67.72 -0.16 0.98 16 3 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 4 C -0.02 -0.22 5.00 -29.52 -0.15 -0.37 16 5 C 0.22 3.72 15.15 -20.76 -0.31 3.40 16 6 N -0.44 -9.21 18.54 42.15 0.78 -8.42 16 7 N -0.50 -9.31 3.73 -234.90 -0.88 -10.18 16 8 C 0.03 0.42 8.59 60.07 0.52 0.93 16 9 C 0.11 2.23 4.30 -3.82 -0.02 2.22 16 10 C 0.05 1.21 1.01 -155.66 -0.16 1.05 16 11 C -0.45 -12.37 8.16 -34.44 -0.28 -12.65 16 12 H 0.05 1.54 7.82 -52.49 -0.41 1.13 16 13 C 0.07 2.11 5.43 -17.82 -0.10 2.01 16 14 N -0.89 -25.81 12.67 55.43 0.70 -25.10 16 15 Si 0.88 23.13 29.54 -169.99 -5.02 18.11 16 16 H -0.27 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.28 -7.71 7.11 56.52 0.40 -7.31 16 18 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 19 C -0.22 -4.69 9.61 -26.74 -0.26 -4.94 16 20 C -0.15 -3.61 9.20 -26.74 -0.25 -3.86 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.63 6.49 -51.93 -0.34 0.29 16 23 H 0.06 0.78 6.91 -51.93 -0.36 0.42 16 24 H 0.10 1.05 6.08 -51.93 -0.32 0.73 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.75 6.00 -51.93 -0.31 0.44 16 27 H 0.07 1.38 7.28 -51.93 -0.38 1.01 16 28 H 0.02 0.22 6.50 -51.93 -0.34 -0.12 16 29 H 0.07 1.55 7.88 -51.93 -0.41 1.14 16 30 H 0.01 0.12 6.99 -51.93 -0.36 -0.25 16 31 H 0.25 7.20 8.32 -40.82 -0.34 6.86 16 32 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.08 2.15 8.14 -51.93 -0.42 1.73 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 290.09 15.07 4.37 4.37 Total: -1.00 -31.71 290.09 -6.19 -37.90 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -5.30 Total: -3.70 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.84 Total: -12.97 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.61 Total: -43.71 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.71 -6.19 -37.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.680 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds