Wall clock time and date at job start Sun Mar 29 2020 22:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47009 * 2 1 4 4 C 1.52999 * 109.46883 * 240.00121 * 2 1 3 5 5 C 1.47200 * 109.47379 * 174.99637 * 4 2 1 6 6 N 3.43551 * 154.82299 * 248.43667 * 2 1 3 7 7 N 1.46892 * 109.47324 * 120.00028 * 2 1 3 8 8 C 1.46902 * 111.00009 * 58.95161 * 7 2 1 9 9 C 1.46902 * 111.00307 * 294.99892 * 7 2 1 10 10 C 1.52998 * 109.47451 * 196.38051 * 9 7 2 11 11 C 1.50704 * 115.55019 * 39.78292 * 10 9 7 12 12 H 1.07999 * 119.99764 * 264.46009 * 11 10 9 13 13 C 1.37876 * 119.99879 * 84.44945 * 11 10 9 14 14 N 1.31512 * 120.00017 * 4.89638 * 13 11 10 15 15 Si 1.86799 * 120.00252 * 184.88839 * 13 11 10 16 16 H 1.48501 * 109.46872 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47486 * 120.00341 * 15 13 11 18 18 H 1.48500 * 109.47563 * 240.00733 * 15 13 11 19 19 C 1.52998 * 117.50163 * 254.07625 * 10 9 7 20 20 C 1.52993 * 60.00042 * 252.50963 * 19 10 9 21 21 H 1.08997 * 109.47435 * 59.99874 * 1 2 3 22 22 H 1.08997 * 109.47009 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46824 * 299.99847 * 1 2 3 24 24 H 1.08996 * 109.47198 * 295.00044 * 4 2 1 25 25 H 1.09005 * 109.47068 * 54.99742 * 4 2 1 26 26 H 1.09002 * 109.47189 * 55.39852 * 8 7 2 27 27 H 1.08997 * 109.47375 * 175.39182 * 8 7 2 28 28 H 1.08997 * 109.47566 * 295.39655 * 8 7 2 29 29 H 1.08999 * 109.46824 * 316.38165 * 9 7 2 30 30 H 1.09000 * 109.46999 * 76.38202 * 9 7 2 31 31 H 0.97004 * 120.00270 * 184.99479 * 14 13 11 32 32 H 1.09000 * 117.49672 * 359.97438 * 19 10 9 33 33 H 1.08994 * 117.50005 * 145.01654 * 19 10 9 34 34 H 1.09001 * 117.49740 * 252.51313 * 20 19 10 35 35 H 1.09003 * 117.52031 * 107.47680 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5069 -0.6173 -1.3114 6 7 4.6391 -0.5372 -1.3592 7 7 2.0197 -0.6925 1.1993 8 6 1.5283 -2.0761 1.2459 9 6 1.6488 0.0392 2.4180 10 6 2.4959 -0.4599 3.5903 11 6 3.9420 -0.7420 3.2735 12 1 4.2554 -1.7463 3.0297 13 6 4.8649 0.2822 3.2947 14 7 4.5033 1.4851 3.6844 15 14 6.6287 -0.0388 2.7701 16 1 6.7772 -1.4636 2.3787 17 1 6.9672 0.8296 1.6140 18 1 7.5439 0.2624 3.9001 19 6 1.8118 -1.3543 4.6260 20 6 2.1716 0.0898 4.9808 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7516 -1.7714 -1.2056 25 1 1.6052 -0.2617 -2.1370 26 1 1.8067 -2.5917 0.3268 27 1 1.9707 -2.5903 2.0991 28 1 0.4430 -2.0731 1.3464 29 1 1.8251 1.1046 2.2700 30 1 0.5938 -0.1279 2.6352 31 1 5.1322 2.2218 3.6308 32 1 0.7580 -1.5868 4.4726 33 1 2.4075 -2.1471 5.0784 34 1 3.0041 0.2471 5.6665 35 1 1.3549 0.8073 5.0603 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:52 Heat of formation + Delta-G solvation = 37.763707 kcal Electronic energy + Delta-G solvation = -15779.002891 eV Core-core repulsion = 13391.412861 eV Total energy + Delta-G solvation = -2387.590030 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.86492 -37.95820 -36.80727 -33.87186 -32.51283 -29.06442 -28.18863 -27.31542 -25.27237 -22.80699 -21.20940 -20.55855 -18.38655 -17.86355 -16.96375 -16.61617 -15.88128 -15.53855 -14.98672 -14.66366 -14.49623 -14.24175 -14.02948 -13.46295 -13.26867 -13.08075 -12.87829 -12.73001 -12.60402 -12.55581 -12.37375 -12.09678 -11.96733 -11.82994 -11.47771 -11.15117 -10.84924 -10.24867 -9.80004 -8.67956 -8.03429 -6.03862 1.28929 1.37135 1.42745 2.02941 2.08740 2.44374 3.21590 3.30513 3.41756 3.63447 4.09205 4.33435 4.43905 4.53424 4.54385 4.62467 4.77894 4.80836 4.86077 4.90598 4.98387 5.05657 5.06099 5.21317 5.26978 5.34644 5.43125 5.51238 5.72244 5.74789 5.89661 6.42587 6.65816 6.67725 6.90192 6.98437 7.59607 9.05670 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.013661 C = 0.009350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.011234 B = 2049.168857 C = 2993.791414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.077 3.923 3 H 0.062 0.938 4 C -0.014 4.014 5 C 0.242 3.758 6 N -0.521 5.521 7 N -0.539 5.539 8 C 0.029 3.971 9 C 0.125 3.875 10 C 0.025 3.975 11 C -0.446 4.446 12 H 0.038 0.962 13 C 0.036 3.964 14 N -0.910 5.910 15 Si 0.917 3.083 16 H -0.278 1.278 17 H -0.299 1.299 18 H -0.283 1.283 19 C -0.188 4.188 20 C -0.165 4.165 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.045 0.955 24 H 0.134 0.866 25 H 0.155 0.845 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.029 0.971 31 H 0.251 0.749 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 -4.486 -8.519 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.033 4.033 3 H 0.080 0.920 4 C -0.054 4.054 5 C -0.074 4.074 6 N -0.199 5.199 7 N -0.262 5.262 8 C -0.118 4.118 9 C -0.003 4.003 10 C 0.025 3.975 11 C -0.484 4.484 12 H 0.056 0.944 13 C -0.162 4.162 14 N -0.551 5.551 15 Si 0.747 3.253 16 H -0.203 1.203 17 H -0.226 1.226 18 H -0.209 1.209 19 C -0.225 4.225 20 C -0.203 4.203 21 H 0.107 0.893 22 H 0.095 0.905 23 H 0.064 0.936 24 H 0.152 0.848 25 H 0.173 0.827 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.760 -4.236 -8.533 14.371 hybrid contribution 0.438 0.304 0.246 0.587 sum -10.322 -3.932 -8.287 13.808 Atomic orbital electron populations 1.22345 0.94105 1.03551 1.03101 1.21759 0.94771 0.97520 0.89215 0.92014 1.19849 0.79160 1.05860 1.00515 1.29845 0.96065 0.91146 0.90353 1.81183 1.15807 1.11140 1.11819 1.61857 1.60251 1.02664 1.01420 1.22373 0.97802 0.89456 1.02207 1.21265 0.93839 0.95705 0.89510 1.19003 0.93366 0.98118 0.87041 1.20345 0.91566 0.93205 1.43292 0.94368 1.25199 0.99633 0.95761 0.95636 1.70065 1.35851 1.00402 1.48808 0.86147 0.84269 0.77686 0.77210 1.20345 1.22606 1.20913 1.23027 0.99478 0.92924 1.07077 1.22381 1.00425 0.95089 1.02399 0.89342 0.90453 0.93552 0.84833 0.82721 0.90355 0.93630 0.93990 0.94561 0.95314 0.93979 0.88943 0.91339 0.92909 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 8.52 71.98 0.61 -2.44 16 2 C 0.08 1.98 2.30 44.92 0.10 2.09 16 3 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 4 C -0.01 -0.28 5.00 28.79 0.14 -0.13 16 5 C 0.24 7.91 15.15 89.44 1.35 9.26 16 6 N -0.52 -22.06 18.54 20.01 0.37 -21.69 16 7 N -0.54 -18.84 3.73 -897.08 -3.34 -22.18 16 8 C 0.03 0.84 8.59 127.69 1.10 1.93 16 9 C 0.12 5.04 4.30 86.30 0.37 5.41 16 10 C 0.03 1.20 1.01 -52.93 -0.05 1.15 16 11 C -0.45 -24.61 8.16 25.60 0.21 -24.40 16 12 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 13 C 0.04 2.07 5.43 84.65 0.46 2.53 16 14 N -0.91 -54.17 12.67 21.45 0.27 -53.89 16 15 Si 0.92 48.67 29.54 68.60 2.03 50.70 16 16 H -0.28 -14.76 7.11 99.48 0.71 -14.06 16 17 H -0.30 -16.46 7.11 99.48 0.71 -15.76 16 18 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 19 C -0.19 -7.71 9.61 30.59 0.29 -7.42 16 20 C -0.16 -7.69 9.20 30.59 0.28 -7.41 16 21 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.08 1.14 6.49 -2.39 -0.02 1.12 16 23 H 0.05 0.99 6.91 -2.39 -0.02 0.97 16 24 H 0.13 1.92 6.08 -2.39 -0.01 1.91 16 25 H 0.16 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.08 1.82 6.00 -2.39 -0.01 1.81 16 27 H 0.04 1.57 7.28 -2.39 -0.02 1.55 16 28 H 0.04 0.97 6.50 -2.39 -0.02 0.96 16 29 H 0.04 1.66 7.88 -2.39 -0.02 1.64 16 30 H 0.03 1.02 6.99 -2.39 -0.02 1.00 16 31 H 0.25 14.61 8.32 -92.71 -0.77 13.84 16 32 H 0.09 3.19 8.08 -2.39 -0.02 3.17 16 33 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.05 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -72.12 290.09 5.26 -66.86 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: 1.06 Total: -0.36 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.87 Total: -19.43 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -2.70 Total: -97.77 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -72.12 5.26 -66.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.626 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds