Wall clock time and date at job start Sun Mar 29 2020 22:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36343 * 125.63520 * 2 1 4 4 C 1.34848 * 108.21469 * 180.02562 * 3 2 1 5 5 C 1.40891 * 107.42236 * 359.76945 * 4 3 2 6 6 C 1.34856 * 107.41241 * 0.38064 * 5 4 3 7 7 C 1.50704 * 125.88842 * 179.88807 * 6 5 4 8 8 N 1.46895 * 109.47030 * 94.68810 * 7 6 5 9 9 C 1.46906 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46946 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99908 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99697 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99899 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99714 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99774 * 16 14 12 19 19 H 1.48498 * 109.46997 * 329.99585 * 16 14 12 20 20 H 1.09005 * 109.46859 * 269.97423 * 1 2 3 21 21 H 1.08999 * 109.46930 * 29.97208 * 1 2 3 22 22 H 1.08996 * 109.47120 * 149.97477 * 1 2 3 23 23 H 1.07992 * 125.89272 * 359.97438 * 3 2 1 24 24 H 1.08006 * 126.28938 * 180.02562 * 4 3 2 25 25 H 1.07999 * 126.29437 * 180.23946 * 5 4 3 26 26 H 1.08996 * 109.46908 * 334.68628 * 7 6 5 27 27 H 1.09002 * 109.46622 * 214.68802 * 7 6 5 28 28 H 1.00899 * 111.00672 * 56.04735 * 8 7 6 29 29 H 1.08992 * 109.47459 * 299.99826 * 9 8 7 30 30 H 1.09004 * 109.47040 * 59.99976 * 9 8 7 31 31 H 1.09001 * 109.47142 * 300.00160 * 10 9 8 32 32 H 1.09004 * 109.47006 * 60.00213 * 10 9 8 33 33 H 1.09001 * 109.47372 * 300.00036 * 11 10 9 34 34 H 1.09004 * 109.47108 * 60.00292 * 11 10 9 35 35 H 0.97007 * 119.99539 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7045 0.0045 6 6 2.2594 -1.1081 -0.0006 7 6 1.7819 -2.5375 -0.0003 8 7 1.5132 -2.9637 1.3795 9 6 1.0440 -4.3552 1.4188 10 6 0.7760 -4.7623 2.8691 11 6 0.2868 -6.2114 2.9099 12 6 0.0221 -6.6122 4.3383 13 1 0.1860 -5.9041 5.1371 14 6 -0.4292 -7.8830 4.6255 15 7 -0.6293 -8.7452 3.6527 16 14 -0.7580 -8.3796 6.3960 17 1 -2.1678 -8.0688 6.7437 18 1 -0.5189 -9.8367 6.5540 19 1 0.1515 -7.6281 7.2978 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8897 -0.5142 23 1 1.9173 2.1324 -0.0004 24 1 4.4166 1.3437 -0.0003 25 1 4.4166 -1.3437 0.0090 26 1 2.5498 -3.1772 -0.4352 27 1 0.8679 -2.6153 -0.5892 28 1 0.8515 -2.3467 1.8263 29 1 0.1249 -4.4453 0.8400 30 1 1.8066 -5.0079 0.9936 31 1 1.6954 -4.6724 3.4476 32 1 0.0136 -4.1098 3.2947 33 1 -0.6327 -6.3010 2.3315 34 1 1.0489 -6.8643 2.4842 35 1 -0.9472 -9.6391 3.8547 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164200117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:45 Heat of formation + Delta-G solvation = 34.152173 kcal Electronic energy + Delta-G solvation = -14362.857145 eV Core-core repulsion = 11975.110507 eV Total energy + Delta-G solvation = -2387.746638 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19296 -36.39263 -33.57899 -32.89044 -31.59526 -29.27574 -26.44205 -26.32501 -24.13461 -22.16756 -20.59412 -20.23245 -19.09707 -16.96240 -16.26096 -15.65774 -15.32916 -14.52955 -14.39978 -14.01649 -13.78811 -13.29362 -12.86049 -12.43307 -12.32625 -12.11103 -12.03501 -11.87282 -11.48575 -11.31139 -10.82763 -10.57331 -10.49421 -9.69046 -9.35463 -9.05582 -8.58978 -8.33273 -8.26366 -7.95539 -5.98364 -4.00332 2.21012 2.90819 3.06336 3.33236 3.39381 3.43578 4.45268 4.56385 4.61153 4.86299 4.96457 5.02065 5.18420 5.27952 5.37513 5.59003 5.65289 5.75056 5.79825 5.90657 6.29545 6.30910 6.39247 6.71729 6.75130 7.05276 7.13940 7.22633 7.28847 7.38979 7.57897 7.69903 7.84654 8.02086 8.45506 9.06844 9.63605 11.13115 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.058726 B = 0.004013 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.675216 B = 6975.820731 C = 7001.903031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.449 5.449 3 C -0.021 4.021 4 C -0.203 4.203 5 C -0.181 4.181 6 C 0.021 3.979 7 C 0.127 3.873 8 N -0.684 5.684 9 C 0.058 3.942 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.158 0.842 24 H 0.133 0.867 25 H 0.135 0.865 26 H 0.092 0.908 27 H 0.030 0.970 28 H 0.334 0.666 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.017 0.983 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 17.520 -9.168 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.150 4.150 4 C -0.228 4.228 5 C -0.206 4.206 6 C -0.090 4.090 7 C -0.002 4.002 8 N -0.315 5.315 9 C -0.070 4.070 10 C -0.145 4.145 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.092 0.908 21 H 0.100 0.900 22 H 0.099 0.901 23 H 0.175 0.825 24 H 0.151 0.849 25 H 0.152 0.848 26 H 0.110 0.890 27 H 0.048 0.952 28 H 0.152 0.848 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.116 17.151 -9.081 19.655 hybrid contribution -1.194 -0.182 0.620 1.358 sum 1.922 16.969 -8.461 19.058 Atomic orbital electron populations 1.22004 0.77803 1.04064 1.03357 1.43930 1.05870 1.05935 1.56853 1.21726 0.90650 0.91110 1.11551 1.20868 0.95802 0.95201 1.10884 1.20684 0.95317 0.94850 1.09788 1.20306 0.90552 0.88156 1.09990 1.20377 0.99663 0.89342 0.90837 1.60611 1.51221 1.04327 1.15311 1.22172 0.97738 0.87525 0.99568 1.21625 1.00421 0.99740 0.92680 1.19071 0.96135 0.89375 0.96998 1.21264 1.43954 0.97556 0.92947 0.92668 1.25032 0.95681 0.96669 0.97148 1.69969 1.46492 1.05731 1.31446 0.86590 0.78542 0.77660 0.85201 1.20730 1.21220 1.19825 0.90824 0.89991 0.90080 0.82471 0.84927 0.84759 0.88971 0.95250 0.84844 0.95814 0.91180 0.92421 0.93781 0.96844 0.96486 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.92 59.85 0.65 1.22 16 2 N -0.45 -5.13 3.15 -119.89 -0.38 -5.51 16 3 C -0.02 -0.23 11.43 -16.75 -0.19 -0.42 16 4 C -0.20 -2.43 10.86 -39.78 -0.43 -2.86 16 5 C -0.18 -2.42 10.77 -39.78 -0.43 -2.85 16 6 C 0.02 0.28 6.40 -81.79 -0.52 -0.25 16 7 C 0.13 1.67 5.84 -4.98 -0.03 1.64 16 8 N -0.68 -10.46 6.49 -115.06 -0.75 -11.21 16 9 C 0.06 1.02 5.68 -3.82 -0.02 0.99 16 10 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 16 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.08 0.64 7.12 -51.93 -0.37 0.27 16 23 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 24 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 25 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 26 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.03 0.36 7.22 -51.93 -0.37 -0.02 16 28 H 0.33 4.91 8.72 -39.29 -0.34 4.57 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -31.80 297.20 -8.30 -40.10 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.70 Total: -0.01 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -1.67 Total: -18.23 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.39 Total: -43.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.80 -8.30 -40.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164200117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.254 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds