Wall clock time and date at job start Sun Mar 29 2020 21:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 115.56172 * 2 1 4 4 C 1.52995 * 117.50313 * 145.69006 * 2 1 3 5 5 C 1.53000 * 60.00129 * 107.48971 * 4 2 1 6 6 H 1.09000 * 117.49599 * 107.51746 * 5 4 2 7 7 C 1.50703 * 117.49577 * 252.51296 * 5 4 2 8 8 N 1.29942 * 126.29216 * 8.58445 * 7 5 4 9 9 O 1.21298 * 110.25032 * 179.72495 * 8 7 5 10 10 C 1.33638 * 109.81309 * 0.47297 * 9 8 7 11 11 C 1.50698 * 126.55178 * 179.80564 * 10 9 8 12 12 C 1.53003 * 109.46707 * 269.67986 * 11 10 9 13 13 C 1.50703 * 109.47038 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 N 1.31128 * 106.89640 * 359.53375 * 10 9 8 22 22 H 1.08999 * 109.46919 * 205.68979 * 1 2 3 23 23 H 1.08999 * 109.46618 * 325.68813 * 1 2 3 24 24 H 1.09001 * 109.47254 * 85.68839 * 1 2 3 25 25 H 1.09003 * 117.49591 * 359.97438 * 4 2 1 26 26 H 1.09001 * 117.50231 * 214.97648 * 4 2 1 27 27 H 1.08996 * 109.47466 * 149.68310 * 11 10 9 28 28 H 1.08996 * 109.47158 * 29.68090 * 11 10 9 29 29 H 1.09003 * 109.46825 * 60.00385 * 12 11 10 30 30 H 1.08996 * 109.47396 * 299.99958 * 12 11 10 31 31 H 0.96998 * 119.99255 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1209 0.7649 5 6 2.2365 -1.1209 -0.7651 6 1 3.1717 -0.8755 -1.2683 7 6 1.3720 -2.1406 -1.4608 8 7 0.5024 -2.9246 -0.8973 9 8 -0.0330 -3.6252 -1.7302 10 6 0.4664 -3.3534 -2.9395 11 6 0.0736 -4.0057 -4.2400 12 6 0.9646 -5.2244 -4.4887 13 6 0.5723 -5.8764 -5.7896 14 1 -0.2323 -5.4631 -6.3797 15 6 1.2399 -7.0011 -6.2258 16 7 2.2194 -7.5047 -5.5070 17 14 0.7541 -7.8088 -7.8386 18 1 -0.2920 -8.8318 -7.5846 19 1 1.9440 -8.4578 -8.4454 20 1 0.2241 -6.7791 -8.7681 21 7 1.3593 -2.4066 -2.7792 22 1 -0.3633 -0.9261 0.4455 23 1 -0.3632 0.8488 0.5793 24 1 -0.3634 0.0773 -1.0248 25 1 1.6113 -1.8582 1.2686 26 1 3.1717 -0.8751 1.2682 27 1 0.1968 -3.2932 -5.0556 28 1 -0.9682 -4.3218 -4.1879 29 1 0.8414 -5.9370 -3.6731 30 1 2.0064 -4.9083 -4.5409 31 1 2.4718 -7.0850 -4.6698 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235609815.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:36 Heat of formation + Delta-G solvation = 69.357998 kcal Electronic energy + Delta-G solvation = -14546.847696 eV Core-core repulsion = 12024.794603 eV Total energy + Delta-G solvation = -2522.053094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.18906 -38.29844 -35.44618 -34.36856 -32.45371 -29.99772 -28.80795 -25.42665 -24.89851 -23.10812 -21.86438 -21.05017 -19.62670 -17.76048 -17.16346 -16.72953 -15.75740 -14.82068 -14.29773 -13.76328 -13.53995 -13.42193 -12.76822 -12.48688 -12.28995 -12.10850 -11.71008 -11.66056 -11.55365 -10.89837 -10.71694 -10.64732 -10.36623 -10.24927 -10.16171 -10.02184 -9.28574 -8.69632 -8.41057 -6.44897 -4.16535 1.50964 2.47182 3.27602 3.41741 3.45044 3.60636 3.63410 3.74653 4.31696 4.49626 4.51748 4.76615 4.84051 5.10508 5.33394 5.45187 5.55035 5.59008 5.68257 5.79289 5.87857 5.92564 6.03034 6.09633 6.14669 6.36935 6.48661 7.17424 7.27519 8.01372 8.34988 8.53921 8.76267 9.56530 10.95783 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.071931 B = 0.005071 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.170435 B = 5520.638888 C = 5635.815308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.132 4.132 3 H 0.115 0.885 4 C -0.157 4.157 5 C -0.073 4.073 6 H 0.132 0.868 7 C 0.199 3.801 8 N -0.397 5.397 9 O 0.066 5.934 10 C 0.210 3.790 11 C -0.020 4.020 12 C 0.014 3.986 13 C -0.606 4.606 14 H 0.056 0.944 15 C 0.018 3.982 16 N -0.908 5.908 17 Si 1.075 2.925 18 H -0.287 1.287 19 H -0.284 1.284 20 H -0.287 1.287 21 N -0.493 5.493 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.014 0.986 30 H 0.017 0.983 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 12.725 9.138 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.151 4.151 3 H 0.133 0.867 4 C -0.195 4.195 5 C -0.092 4.092 6 H 0.150 0.850 7 C -0.073 4.073 8 N -0.108 5.108 9 O 0.011 5.989 10 C -0.009 4.009 11 C -0.060 4.060 12 C -0.024 4.024 13 C -0.644 4.644 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.544 5.544 17 Si 0.902 3.098 18 H -0.213 1.213 19 H -0.210 1.210 20 H -0.213 1.213 21 N -0.226 5.226 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.176 11.746 8.836 14.859 hybrid contribution -0.295 1.157 0.906 1.499 sum -2.470 12.904 9.742 16.356 Atomic orbital electron populations 1.21405 0.92530 1.02498 1.01951 1.22470 0.95922 0.94170 1.02565 0.86685 1.23234 1.03016 1.01319 0.91928 1.20145 0.99078 0.96501 0.93523 0.84971 1.24628 0.97080 0.98097 0.87533 1.74482 1.13114 1.07994 1.15184 1.85273 1.50462 1.48099 1.15071 1.29616 0.89142 0.91091 0.91044 1.20584 1.02338 0.98870 0.84172 1.19280 0.94499 0.90442 0.98147 1.21927 1.21513 1.14700 1.06297 0.92603 1.25898 0.93918 0.94961 1.03884 1.70754 1.27275 1.41650 1.14693 0.83462 0.76047 0.75740 0.74510 1.21333 1.20951 1.21306 1.71880 1.20082 1.15720 1.14960 0.91736 0.91802 0.92548 0.87817 0.87682 0.88078 0.88947 0.96726 0.96428 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.13 37.16 0.34 -1.09 16 2 C -0.13 -1.41 6.41 -90.62 -0.58 -1.99 16 3 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.16 -1.71 9.79 -26.73 -0.26 -1.97 16 5 C -0.07 -0.98 6.33 -91.77 -0.58 -1.56 16 6 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 7 C 0.20 3.48 6.88 -156.37 -1.08 2.40 16 8 N -0.40 -7.19 10.92 30.89 0.34 -6.85 16 9 O 0.07 1.26 11.31 18.11 0.20 1.47 16 10 C 0.21 4.09 7.77 -13.06 -0.10 3.98 16 11 C -0.02 -0.40 5.78 -27.88 -0.16 -0.56 16 12 C 0.01 0.36 4.27 -27.88 -0.12 0.24 16 13 C -0.61 -16.52 9.11 -34.44 -0.31 -16.84 16 14 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 16 N -0.91 -27.50 13.65 55.43 0.76 -26.74 16 17 Si 1.07 24.59 29.90 -169.99 -5.08 19.51 16 18 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 21 N -0.49 -9.67 11.55 -9.88 -0.11 -9.78 16 22 H 0.06 0.81 7.22 -51.93 -0.37 0.44 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.10 1.25 7.82 -51.93 -0.41 0.84 16 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 28 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.01 0.38 8.01 -51.93 -0.42 -0.04 16 30 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 31 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 LS Contribution 272.58 15.07 4.11 4.11 Total: -1.00 -30.69 272.58 -6.81 -37.50 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.07 Total: -2.23 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.95 Total: -16.98 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.98 Total: -43.38 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.47 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.69 -6.81 -37.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235609815.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.862 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds