Wall clock time and date at job start Sun Mar 29 2020 21:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 115.56172 * 2 1 4 4 C 1.52995 * 117.50313 * 145.69006 * 2 1 3 5 5 C 1.53000 * 60.00129 * 107.48971 * 4 2 1 6 6 H 1.09000 * 117.49599 * 107.51746 * 5 4 2 7 7 C 1.50703 * 117.49577 * 252.51296 * 5 4 2 8 8 N 1.29942 * 126.29216 * 8.58445 * 7 5 4 9 9 O 1.21298 * 110.25032 * 179.72495 * 8 7 5 10 10 C 1.33638 * 109.81309 * 0.47297 * 9 8 7 11 11 C 1.50698 * 126.55178 * 179.80564 * 10 9 8 12 12 C 1.53003 * 109.46707 * 269.67986 * 11 10 9 13 13 C 1.50703 * 109.47038 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 N 1.31128 * 106.89640 * 359.53375 * 10 9 8 22 22 H 1.08999 * 109.46919 * 205.68979 * 1 2 3 23 23 H 1.08999 * 109.46618 * 325.68813 * 1 2 3 24 24 H 1.09001 * 109.47254 * 85.68839 * 1 2 3 25 25 H 1.09003 * 117.49591 * 359.97438 * 4 2 1 26 26 H 1.09001 * 117.50231 * 214.97648 * 4 2 1 27 27 H 1.08996 * 109.47466 * 149.68310 * 11 10 9 28 28 H 1.08996 * 109.47158 * 29.68090 * 11 10 9 29 29 H 1.09003 * 109.46825 * 60.00385 * 12 11 10 30 30 H 1.08996 * 109.47396 * 299.99958 * 12 11 10 31 31 H 0.96998 * 119.99255 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1209 0.7649 5 6 2.2365 -1.1209 -0.7651 6 1 3.1717 -0.8755 -1.2683 7 6 1.3720 -2.1406 -1.4608 8 7 0.5024 -2.9246 -0.8973 9 8 -0.0330 -3.6252 -1.7302 10 6 0.4664 -3.3534 -2.9395 11 6 0.0736 -4.0057 -4.2400 12 6 0.9646 -5.2244 -4.4887 13 6 0.5723 -5.8764 -5.7896 14 1 -0.2323 -5.4631 -6.3797 15 6 1.2399 -7.0011 -6.2258 16 7 2.2194 -7.5047 -5.5070 17 14 0.7541 -7.8088 -7.8386 18 1 -0.2920 -8.8318 -7.5846 19 1 1.9440 -8.4578 -8.4454 20 1 0.2241 -6.7791 -8.7681 21 7 1.3593 -2.4066 -2.7792 22 1 -0.3633 -0.9261 0.4455 23 1 -0.3632 0.8488 0.5793 24 1 -0.3634 0.0773 -1.0248 25 1 1.6113 -1.8582 1.2686 26 1 3.1717 -0.8751 1.2682 27 1 0.1968 -3.2932 -5.0556 28 1 -0.9682 -4.3218 -4.1879 29 1 0.8414 -5.9370 -3.6731 30 1 2.0064 -4.9083 -4.5409 31 1 2.4718 -7.0850 -4.6698 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235609815.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:36 Heat of formation + Delta-G solvation = 49.953751 kcal Electronic energy + Delta-G solvation = -14547.689128 eV Core-core repulsion = 12024.794603 eV Total energy + Delta-G solvation = -2522.894525 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.64046 -39.28197 -37.07093 -36.10201 -34.23603 -31.72593 -29.72750 -27.34999 -26.14173 -24.78523 -23.53559 -22.08514 -20.88818 -19.33622 -18.78599 -18.45487 -16.78475 -16.26702 -15.71486 -15.61779 -15.23535 -14.39265 -14.35860 -14.00615 -13.70056 -13.39260 -13.18945 -12.93142 -12.69057 -12.52115 -12.41226 -12.18277 -12.05637 -11.87638 -11.44621 -11.21734 -10.82363 -10.56654 -10.55834 -8.70217 -6.42606 0.02283 1.07832 1.58098 1.67198 1.76445 1.84278 2.48197 2.60614 2.66481 3.04663 3.16479 3.59300 3.68350 3.85426 4.13786 4.29241 4.32078 4.33245 4.56239 4.66943 4.70117 4.77255 4.78713 4.93305 4.94859 5.01846 5.16012 5.25586 5.28104 5.88190 6.15594 6.50771 7.06763 7.40757 8.70530 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.071931 B = 0.005071 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.170435 B = 5520.638888 C = 5635.815308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.114 4.114 3 H 0.148 0.852 4 C -0.144 4.144 5 C -0.107 4.107 6 H 0.143 0.857 7 C 0.202 3.798 8 N -0.404 5.404 9 O 0.056 5.944 10 C 0.204 3.796 11 C -0.007 4.007 12 C 0.018 3.982 13 C -0.615 4.615 14 H 0.070 0.930 15 C -0.039 4.039 16 N -0.939 5.939 17 Si 1.124 2.876 18 H -0.271 1.271 19 H -0.288 1.288 20 H -0.262 1.262 21 N -0.512 5.512 22 H 0.045 0.955 23 H 0.090 0.910 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.113 0.887 28 H 0.115 0.885 29 H -0.006 1.006 30 H -0.010 1.010 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 14.209 9.121 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.133 4.133 3 H 0.166 0.834 4 C -0.181 4.181 5 C -0.127 4.127 6 H 0.161 0.839 7 C -0.070 4.070 8 N -0.117 5.117 9 O 0.004 5.996 10 C -0.015 4.015 11 C -0.045 4.045 12 C -0.020 4.020 13 C -0.652 4.652 14 H 0.088 0.912 15 C -0.236 4.236 16 N -0.576 5.576 17 Si 0.945 3.055 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.187 1.187 21 N -0.246 5.246 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.154 0.846 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.012 0.988 30 H 0.008 0.992 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.755 13.241 8.833 16.153 hybrid contribution -0.109 0.765 1.000 1.264 sum -2.864 14.006 9.833 17.351 Atomic orbital electron populations 1.21430 0.93197 1.02734 1.01190 1.22670 0.95435 0.94983 1.00195 0.83399 1.23335 1.04121 1.00777 0.89898 1.20495 0.99583 0.97525 0.95053 0.83942 1.25370 0.96670 0.98021 0.86922 1.74481 1.13834 1.08441 1.14953 1.85254 1.50862 1.48517 1.14997 1.29471 0.89497 0.91435 0.91129 1.20345 1.02325 0.96996 0.84871 1.19115 0.94006 0.92065 0.96816 1.22388 1.21336 1.14532 1.06972 0.91174 1.27520 0.93263 0.96035 1.06757 1.70901 1.29286 1.42606 1.14825 0.82851 0.76021 0.75803 0.70854 1.19692 1.21392 1.18658 1.71886 1.20192 1.16125 1.16397 0.93595 0.89093 0.94181 0.89309 0.84611 0.86929 0.86666 0.98799 0.99214 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.13 71.98 0.66 -2.01 16 2 C -0.11 -2.12 6.41 -10.79 -0.07 -2.19 16 3 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.14 -2.79 9.79 30.59 0.30 -2.49 16 5 C -0.11 -2.70 6.33 -11.54 -0.07 -2.77 16 6 H 0.14 3.25 8.14 -2.39 -0.02 3.23 16 7 C 0.20 7.03 6.88 138.46 0.95 7.98 16 8 N -0.40 -14.72 10.92 -60.35 -0.66 -15.38 16 9 O 0.06 2.16 11.31 74.88 0.85 3.00 16 10 C 0.20 7.99 7.77 88.38 0.69 8.68 16 11 C -0.01 -0.26 5.78 29.85 0.17 -0.08 16 12 C 0.02 0.93 4.27 29.85 0.13 1.05 16 13 C -0.61 -33.40 9.11 25.60 0.23 -33.17 16 14 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 15 C -0.04 -2.18 5.46 84.65 0.46 -1.71 16 16 N -0.94 -58.12 13.65 21.45 0.29 -57.83 16 17 Si 1.12 48.61 29.90 68.60 2.05 50.66 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 N -0.51 -20.13 11.55 -303.23 -3.50 -23.63 16 22 H 0.04 1.12 7.22 -2.39 -0.02 1.10 16 23 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 2.02 7.82 -2.39 -0.02 2.00 16 26 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 28 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 29 H -0.01 -0.34 8.01 -2.39 -0.02 -0.36 16 30 H -0.01 -0.59 8.01 -2.39 -0.02 -0.60 16 31 H 0.25 16.02 7.22 -92.71 -0.67 15.35 16 Total: -1.00 -67.07 272.58 3.70 -63.37 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.22 Total: 6.51 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 3.45 Total: -26.70 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.87 Total: -96.84 kcal Atomic # 8 Polarization: 2.16 SS G_CDS: 0.85 Total: 3.00 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.05 Total: 50.66 kcal Total: -67.07 3.70 -63.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235609815.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.324 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds