Wall clock time and date at job start Sun Mar 29 2020 22:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48496 * 109.46852 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99925 * 3 2 1 6 6 H 1.48503 * 109.46797 * 59.99733 * 3 2 1 7 7 C 1.39057 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99527 * 179.97438 * 7 2 1 9 9 N 1.36766 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.34786 * 119.99739 * 179.97438 * 9 7 2 11 11 O 1.21843 * 119.99897 * 359.97438 * 10 9 7 12 12 C 1.41273 * 119.99573 * 179.97438 * 10 9 7 13 13 C 1.35807 * 119.99495 * 179.97438 * 12 10 9 14 14 C 1.41503 * 119.99955 * 179.71964 * 13 12 10 15 15 C 1.37116 * 125.48188 * 179.97438 * 14 13 12 16 16 C 1.37418 * 113.21397 * 179.80450 * 15 14 13 17 17 C 1.33873 * 115.13090 * 0.49622 * 16 15 14 18 18 S 1.70610 * 111.02593 * 359.72708 * 17 16 15 19 19 H 0.96995 * 119.99854 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00576 * 359.97438 * 9 7 2 21 21 H 1.08001 * 120.00666 * 359.97438 * 12 10 9 22 22 H 1.08002 * 120.00372 * 0.02562 * 13 12 10 23 23 H 1.08000 * 123.39359 * 0.02562 * 15 14 13 24 24 H 1.07997 * 122.43191 * 180.22478 * 16 15 14 25 25 H 1.07999 * 124.48950 * 179.76158 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.7077 1.3463 0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0090 -1.2043 0.0005 8 1 3.0890 -1.2043 0.0001 9 7 1.3251 -2.3887 0.0005 10 6 1.9990 -3.5560 0.0005 11 8 3.2174 -3.5560 0.0001 12 6 1.2925 -4.7794 0.0011 13 6 1.9716 -5.9555 0.0006 14 6 1.2641 -7.1809 0.0071 15 6 1.8330 -8.4285 0.0068 16 6 0.9088 -9.4453 0.0184 17 6 -0.3705 -9.0509 0.0173 18 16 -0.4863 -7.3488 0.0090 19 1 -0.4850 0.8400 -0.0004 20 1 0.3551 -2.3887 0.0005 21 1 0.2125 -4.7794 0.0019 22 1 3.0516 -5.9556 0.0001 23 1 2.9001 -8.5951 0.0018 24 1 1.1938 -10.4870 0.0233 25 1 -1.2172 -9.7214 0.0217 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306156186.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:29 Heat of formation + Delta-G solvation = 5.728941 kcal Electronic energy + Delta-G solvation = -11973.330412 eV Core-core repulsion = 9657.719270 eV Total energy + Delta-G solvation = -2315.611142 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.51261 -37.64998 -34.35488 -33.17603 -31.40885 -28.62395 -25.68369 -24.13405 -21.72096 -19.49301 -18.81851 -18.00320 -16.73383 -16.10582 -15.19207 -14.69213 -14.10329 -13.58203 -13.12233 -13.05064 -12.90689 -12.45945 -11.96929 -11.65810 -11.54061 -11.24074 -10.52640 -10.45887 -10.38055 -10.08043 -9.63125 -8.47383 -8.44152 -8.14446 -7.65710 -6.65836 -3.89794 0.51990 1.75332 2.17738 2.18816 3.03660 3.17791 3.18823 3.25564 4.04572 4.38160 4.99159 5.12234 5.25052 5.41779 5.58481 5.64057 5.74349 6.05522 6.35122 6.42811 6.50749 6.88369 6.95316 7.34124 7.92443 8.45885 9.00673 9.37138 9.98575 10.50277 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.071451 B = 0.005314 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.785114 B = 5267.774562 C = 5649.709860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.021 3.979 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.284 4.284 8 H 0.111 0.889 9 N -0.537 5.537 10 C 0.447 3.553 11 O -0.610 6.610 12 C -0.152 4.152 13 C -0.064 4.064 14 C -0.146 4.146 15 C -0.144 4.144 16 C -0.132 4.132 17 C -0.273 4.273 18 S 0.173 5.827 19 H 0.277 0.723 20 H 0.395 0.605 21 H 0.108 0.892 22 H 0.141 0.859 23 H 0.143 0.857 24 H 0.133 0.867 25 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 -12.538 0.016 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.414 4.414 8 H 0.129 0.871 9 N -0.170 5.170 10 C 0.240 3.760 11 O -0.500 6.500 12 C -0.176 4.176 13 C -0.088 4.088 14 C -0.263 4.263 15 C -0.174 4.174 16 C -0.164 4.164 17 C -0.410 4.410 18 S 0.440 5.560 19 H 0.087 0.913 20 H 0.228 0.772 21 H 0.126 0.874 22 H 0.159 0.841 23 H 0.161 0.839 24 H 0.151 0.849 25 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.876 -11.344 0.012 11.988 hybrid contribution 0.774 -0.350 0.004 0.849 sum -3.102 -11.695 0.017 12.099 Atomic orbital electron populations 1.69607 1.06253 1.28921 1.47199 1.25478 0.95731 1.00383 0.96773 0.85689 0.79862 0.80269 0.77976 1.18833 1.20410 1.20413 1.19993 0.94026 0.82355 1.45035 0.87142 1.42084 1.09524 1.05307 1.60040 1.16473 0.88120 0.84013 0.87427 1.90672 1.13313 1.87516 1.58453 1.22215 0.99092 0.94200 1.02107 1.20392 1.00129 0.88534 0.99750 1.22776 0.96212 0.97521 1.09816 1.20815 1.00814 0.90579 1.05166 1.19898 0.91890 1.00445 1.04126 1.25056 1.01513 1.00751 1.13656 1.83151 1.03987 0.99872 1.69013 0.91275 0.77166 0.87397 0.84110 0.83937 0.84900 0.82447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.16 13.05 55.50 0.72 -22.44 15 2 C 0.02 0.54 5.50 -17.44 -0.10 0.44 15 3 Si 0.94 20.28 29.55 -169.99 -5.02 15.25 15 4 H -0.26 -5.74 7.11 56.52 0.40 -5.33 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 7 C -0.28 -7.81 9.67 -15.05 -0.15 -7.95 15 8 H 0.11 3.18 7.15 -52.49 -0.38 2.80 15 9 N -0.54 -13.85 5.26 -13.69 -0.07 -13.92 15 10 C 0.45 11.15 7.50 -15.10 -0.11 11.04 15 11 O -0.61 -17.25 15.68 5.06 0.08 -17.17 15 12 C -0.15 -3.04 9.29 -39.30 -0.37 -3.40 15 13 C -0.06 -1.16 9.37 -39.21 -0.37 -1.53 15 14 C -0.15 -2.26 6.21 -38.75 -0.24 -2.50 15 15 C -0.14 -1.95 10.25 -40.29 -0.41 -2.36 15 16 C -0.13 -1.58 10.14 -41.41 -0.42 -2.00 15 17 C -0.27 -3.20 10.92 29.20 0.32 -2.88 15 18 S 0.17 2.31 21.76 -107.50 -2.34 -0.03 15 19 H 0.28 6.80 8.31 -40.82 -0.34 6.46 15 20 H 0.39 9.63 7.85 -40.82 -0.32 9.31 15 21 H 0.11 1.90 7.04 -52.49 -0.37 1.53 15 22 H 0.14 2.66 7.46 -52.49 -0.39 2.27 15 23 H 0.14 1.69 8.06 -52.49 -0.42 1.27 15 24 H 0.13 1.25 8.06 -52.49 -0.42 0.82 15 25 H 0.16 1.45 8.06 -52.49 -0.42 1.02 15 LS Contribution 247.46 15.07 3.73 3.73 Total: -1.00 -29.99 247.46 -6.60 -36.60 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -1.86 Total: 9.12 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.84 Total: -11.14 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.65 Total: -36.36 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.08 Total: -17.17 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.34 Total: -0.03 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.99 -6.60 -36.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306156186.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.327 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds