Wall clock time and date at job start Sun Mar 29 2020 22:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31374 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47491 * 240.00044 * 3 2 1 5 5 H 1.48498 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00150 * 3 2 1 7 7 C 1.39037 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99711 * 179.97438 * 7 2 1 9 9 N 1.36810 * 119.99765 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99760 * 179.97438 * 9 7 2 11 11 O 1.21823 * 120.00101 * 0.02562 * 10 9 7 12 12 C 1.41474 * 120.00173 * 180.27646 * 10 9 7 13 13 C 1.35389 * 120.00242 * 179.72960 * 12 10 9 14 14 C 1.46654 * 120.00180 * 180.02562 * 13 12 10 15 15 C 1.44533 * 123.50911 * 179.73187 * 14 13 12 16 16 C 1.32735 * 113.09581 * 179.76546 * 15 14 13 17 17 S 1.75487 * 110.64745 * 0.47569 * 16 15 14 18 18 C 1.36353 * 123.50287 * 0.02562 * 14 13 12 19 19 H 0.97005 * 120.00008 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00504 * 0.02562 * 9 7 2 21 21 H 1.08002 * 120.00053 * 359.72305 * 12 10 9 22 22 H 1.08001 * 120.00235 * 359.97438 * 13 12 10 23 23 H 1.08003 * 123.45047 * 359.96518 * 15 14 13 24 24 H 1.07996 * 124.67500 * 180.16252 * 16 15 14 25 25 H 1.07995 * 124.60605 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1015 1.6965 -1.2124 5 1 1.2828 2.7465 0.0006 6 1 3.1015 1.6964 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0890 -1.2040 -0.0010 9 7 1.3249 -2.3889 -0.0005 10 6 1.9987 -3.5561 -0.0016 11 8 3.2170 -3.5561 -0.0021 12 6 1.2914 -4.7813 -0.0075 13 6 1.9684 -5.9538 -0.0141 14 6 1.2352 -7.2238 -0.0208 15 6 1.8799 -8.5173 -0.0336 16 6 1.0195 -9.5280 -0.0328 17 16 -0.6321 -8.9347 -0.0296 18 6 -0.1258 -7.3072 -0.0213 19 1 -0.4850 0.8401 0.0004 20 1 0.3548 -2.3889 -0.0005 21 1 0.2114 -4.7814 -0.0066 22 1 3.0484 -5.9538 -0.0152 23 1 2.9520 -8.6481 -0.0399 24 1 1.2974 -10.5716 -0.0387 25 1 -0.7923 -6.4575 -0.0166 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306356100.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:57 Heat of formation + Delta-G solvation = 5.100707 kcal Electronic energy + Delta-G solvation = -11963.695474 eV Core-core repulsion = 9648.057089 eV Total energy + Delta-G solvation = -2315.638384 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.52527 -37.43237 -34.15928 -32.36373 -31.31784 -28.74799 -25.89574 -24.21346 -21.58214 -19.19897 -18.34445 -17.90841 -17.52933 -15.91957 -15.01359 -14.67561 -13.96771 -13.49006 -13.18946 -13.07278 -12.97391 -12.36643 -12.09923 -11.60569 -11.28104 -11.16263 -10.69056 -10.51366 -10.32256 -9.83680 -9.51631 -8.81036 -8.44463 -8.08586 -7.62490 -6.58642 -3.86860 0.87853 1.71685 1.79898 2.11087 3.10203 3.19561 3.24349 3.27360 4.09096 4.44045 4.79568 5.13331 5.30454 5.31247 5.44170 5.70491 5.81743 5.94264 6.13573 6.35857 6.56167 7.00145 7.05931 7.40412 7.97902 8.52169 9.06525 9.43495 10.03075 10.57857 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.072371 B = 0.004935 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.802858 B = 5672.544476 C = 6049.487975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.022 3.978 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.290 4.290 8 H 0.108 0.892 9 N -0.541 5.541 10 C 0.450 3.550 11 O -0.610 6.610 12 C -0.156 4.156 13 C -0.064 4.064 14 C -0.070 4.070 15 C -0.114 4.114 16 C -0.234 4.234 17 S 0.137 5.863 18 C -0.249 4.249 19 H 0.277 0.723 20 H 0.394 0.606 21 H 0.109 0.891 22 H 0.132 0.868 23 H 0.147 0.853 24 H 0.162 0.838 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 -14.221 -0.062 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.420 4.420 8 H 0.126 0.874 9 N -0.174 5.174 10 C 0.242 3.758 11 O -0.500 6.500 12 C -0.179 4.179 13 C -0.088 4.088 14 C -0.083 4.083 15 C -0.144 4.144 16 C -0.368 4.368 17 S 0.402 5.598 18 C -0.385 4.385 19 H 0.087 0.913 20 H 0.228 0.772 21 H 0.127 0.873 22 H 0.150 0.850 23 H 0.164 0.836 24 H 0.179 0.821 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.949 -14.715 -0.065 15.236 hybrid contribution 1.065 1.637 0.005 1.953 sum -2.884 -13.078 -0.061 13.393 Atomic orbital electron populations 1.69594 1.06188 1.28896 1.48000 1.25423 0.95698 1.00222 0.96852 0.85826 0.78820 0.79785 0.79354 1.19601 1.20761 1.19607 1.19836 0.93850 0.82416 1.45920 0.87429 1.42019 1.09409 1.05199 1.60764 1.16612 0.88096 0.84146 0.86937 1.90657 1.13476 1.87654 1.58167 1.22110 0.99487 0.93923 1.02338 1.21635 0.99601 0.88880 0.98720 1.19522 0.91624 0.93923 1.03250 1.21384 1.00718 0.90652 1.01682 1.25379 0.96336 1.03111 1.12009 1.82807 1.07532 0.97257 1.72191 1.25501 0.99232 1.02005 1.11800 0.91347 0.77243 0.87289 0.84980 0.83584 0.82078 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.76 13.05 55.50 0.72 -23.04 15 2 C 0.02 0.57 5.50 -17.45 -0.10 0.48 15 3 Si 0.94 20.66 29.55 -169.99 -5.02 15.63 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.29 -8.12 9.67 -15.03 -0.15 -8.26 15 8 H 0.11 3.14 7.15 -52.49 -0.38 2.76 15 9 N -0.54 -14.13 5.27 -13.64 -0.07 -14.20 15 10 C 0.45 11.33 7.51 -15.03 -0.11 11.21 15 11 O -0.61 -17.42 15.68 5.08 0.08 -17.34 15 12 C -0.16 -3.11 9.25 -39.37 -0.36 -3.47 15 13 C -0.06 -1.16 9.58 -37.20 -0.36 -1.52 15 14 C -0.07 -1.06 5.97 -104.70 -0.62 -1.69 15 15 C -0.11 -1.45 10.38 -38.98 -0.40 -1.86 15 16 C -0.23 -2.54 11.11 28.85 0.32 -2.22 15 17 S 0.14 1.51 23.02 -107.50 -2.47 -0.97 15 18 C -0.25 -3.41 10.26 30.05 0.31 -3.10 15 19 H 0.28 6.96 8.31 -40.82 -0.34 6.62 15 20 H 0.39 9.73 7.85 -40.82 -0.32 9.41 15 21 H 0.11 1.88 6.53 -52.49 -0.34 1.54 15 22 H 0.13 2.50 7.45 -52.49 -0.39 2.11 15 23 H 0.15 1.59 8.06 -52.48 -0.42 1.17 15 24 H 0.16 1.29 8.06 -52.49 -0.42 0.87 15 25 H 0.17 2.13 6.81 -52.49 -0.36 1.77 15 LS Contribution 247.32 15.07 3.73 3.73 Total: -1.00 -30.80 247.32 -6.28 -37.08 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -1.77 Total: 9.53 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.47 Total: -10.43 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.65 Total: -37.24 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.08 Total: -17.34 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.97 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.80 -6.28 -37.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306356100.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.178 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds