Wall clock time and date at job start Sun Mar 29 2020 22:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86800 * 119.99694 * 2 1 4 4 H 1.48498 * 109.47186 * 269.99707 * 3 2 1 5 5 H 1.48495 * 109.47308 * 30.00422 * 3 2 1 6 6 H 1.48505 * 109.46612 * 149.99989 * 3 2 1 7 7 C 1.38779 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 187.10403 * 7 2 1 9 9 N 1.36850 * 120.00171 * 7.10946 * 7 2 1 10 10 C 1.46529 * 124.91917 * 354.22683 * 9 7 2 11 11 C 1.53758 * 105.18457 * 180.02562 * 10 9 7 12 12 C 1.51227 * 104.48649 * 359.77616 * 11 10 9 13 13 C 1.38099 * 131.01208 * 179.55574 * 12 11 10 14 14 C 1.38385 * 120.14424 * 180.37629 * 13 12 11 15 15 Cl 1.73600 * 120.08255 * 180.25324 * 14 13 12 16 16 C 1.38460 * 119.83247 * 0.27591 * 14 13 12 17 17 C 1.37756 * 120.23992 * 359.97438 * 16 14 13 18 18 C 1.38766 * 108.49433 * 0.37996 * 12 11 10 19 19 H 0.97002 * 119.99891 * 5.00783 * 1 2 3 20 20 H 1.08995 * 110.30282 * 298.93527 * 10 9 7 21 21 H 1.09004 * 110.29557 * 61.07765 * 10 9 7 22 22 H 1.09003 * 110.43204 * 118.75394 * 11 10 9 23 23 H 1.09000 * 110.43220 * 241.12668 * 11 10 9 24 24 H 1.08000 * 119.92367 * 0.64986 * 13 12 11 25 25 H 1.08007 * 119.87693 * 179.97438 * 16 14 13 26 26 H 1.08003 * 119.85966 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4402 0.7001 7 6 2.0100 -1.2019 0.0005 8 1 3.0837 -1.2055 0.1162 9 7 1.3336 -2.3825 -0.1456 10 6 -0.1251 -2.5137 -0.1895 11 6 -0.3892 -4.0184 -0.3631 12 6 0.9881 -4.6411 -0.4110 13 6 1.3833 -5.9576 -0.5447 14 6 2.7286 -6.2819 -0.5535 15 17 3.2237 -7.9366 -0.7283 16 6 3.6787 -5.2833 -0.4223 17 6 3.2893 -3.9692 -0.2835 18 6 1.9319 -3.6332 -0.2735 19 1 -0.4850 0.8369 -0.0733 20 1 -0.5650 -2.1579 0.7421 21 1 -0.5294 -1.9583 -1.0358 22 1 -0.9563 -4.4054 0.4835 23 1 -0.9225 -4.2061 -1.2950 24 1 0.6408 -6.7353 -0.6469 25 1 4.7288 -5.5356 -0.4287 26 1 4.0356 -3.1952 -0.1811 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306466903.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:56 Heat of formation + Delta-G solvation = 14.153891 kcal Electronic energy + Delta-G solvation = -12752.508263 eV Core-core repulsion = 10435.218747 eV Total energy + Delta-G solvation = -2317.289515 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.046 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.06568 -37.89899 -36.60543 -34.63773 -32.87037 -30.05006 -29.59373 -26.75575 -23.69216 -22.43666 -22.01191 -19.30197 -17.57095 -16.87498 -16.41592 -16.35595 -16.00342 -14.87258 -14.57737 -13.88268 -13.69868 -13.49630 -13.40176 -12.98166 -12.66737 -12.54003 -12.32651 -12.20381 -12.14615 -11.90933 -11.34046 -11.07372 -10.45550 -9.57853 -8.46118 -8.36048 -5.69317 0.68289 0.71753 1.39732 1.45203 1.51561 1.59212 2.20839 2.79580 3.06962 3.19713 3.95130 4.06888 4.28080 4.50863 4.51947 4.67493 4.80695 5.06005 5.22289 5.28189 5.33086 5.35828 5.46518 5.65743 5.74455 5.87809 6.20407 6.60221 7.23613 7.70765 8.64027 Molecular weight = 223.05amu Principal moments of inertia in cm(-1) A = 0.052922 B = 0.007430 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.955929 B = 3767.630865 C = 4272.911706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.019 4.019 3 Si 0.999 3.001 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.319 4.319 8 H 0.099 0.901 9 N -0.462 5.462 10 C 0.153 3.847 11 C -0.077 4.077 12 C -0.217 4.217 13 C -0.034 4.034 14 C -0.150 4.150 15 Cl -0.089 7.089 16 C -0.046 4.046 17 C -0.218 4.218 18 C 0.166 3.834 19 H 0.272 0.728 20 H 0.050 0.950 21 H 0.054 0.946 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.137 0.863 25 H 0.139 0.861 26 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 -7.165 -0.975 7.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.219 4.219 3 Si 0.822 3.178 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.446 4.446 8 H 0.117 0.883 9 N -0.147 5.147 10 C 0.029 3.971 11 C -0.114 4.114 12 C -0.224 4.224 13 C -0.054 4.054 14 C -0.181 4.181 15 Cl -0.061 7.061 16 C -0.066 4.066 17 C -0.243 4.243 18 C 0.048 3.952 19 H 0.082 0.918 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.106 0.894 23 H 0.106 0.894 24 H 0.155 0.845 25 H 0.157 0.843 26 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.782 -6.708 -0.864 6.994 hybrid contribution 0.267 0.970 0.020 1.007 sum 2.049 -5.737 -0.844 6.151 Atomic orbital electron populations 1.70141 1.06881 1.28837 1.48688 1.26141 0.96725 1.02561 0.96503 0.84817 0.78017 0.76428 0.78547 1.19831 1.20445 1.18634 1.19839 0.93109 0.83139 1.48506 0.88349 1.43183 1.05220 1.02772 1.63542 1.21613 0.80684 0.93682 1.01078 1.21137 0.94054 0.93273 1.02977 1.19781 0.95062 0.92772 1.14774 1.20043 0.94202 0.94118 0.97048 1.20057 0.93686 0.84513 1.19829 1.98263 1.91770 1.19050 1.97028 1.20564 0.99137 0.90366 0.96508 1.20070 0.92848 0.96349 1.15038 1.18907 0.94081 0.86069 0.96171 0.91778 0.93162 0.92739 0.89399 0.89408 0.84512 0.84309 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.78 10.28 21.64 0.22 -47.55 15 2 C -0.02 -0.98 5.47 84.86 0.46 -0.51 15 3 Si 1.00 40.35 29.56 68.60 2.03 42.38 15 4 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 15 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 7 C -0.32 -16.80 9.94 84.04 0.84 -15.96 15 8 H 0.10 5.02 7.20 -2.91 -0.02 5.00 15 9 N -0.46 -23.49 3.17 -510.05 -1.62 -25.11 15 10 C 0.15 7.16 5.55 86.63 0.48 7.64 15 11 C -0.08 -2.90 6.94 30.27 0.21 -2.69 15 12 C -0.22 -8.79 6.23 -19.60 -0.12 -8.92 15 13 C -0.03 -1.22 9.82 22.27 0.22 -1.00 15 14 C -0.15 -5.21 6.33 22.36 0.14 -5.07 15 15 Cl -0.09 -2.61 28.96 -2.72 -0.08 -2.69 15 16 C -0.05 -1.65 9.81 22.21 0.22 -1.43 15 17 C -0.22 -9.12 9.75 22.54 0.22 -8.90 15 18 C 0.17 7.67 6.64 38.48 0.26 7.92 15 19 H 0.27 13.53 8.32 -92.71 -0.77 12.76 15 20 H 0.05 2.51 7.57 -2.39 -0.02 2.49 15 21 H 0.05 2.71 7.32 -2.39 -0.02 2.70 15 22 H 0.09 2.92 8.14 -2.39 -0.02 2.90 15 23 H 0.09 2.92 8.14 -2.39 -0.02 2.90 15 24 H 0.14 4.08 8.06 -2.91 -0.02 4.05 15 25 H 0.14 4.17 8.06 -2.91 -0.02 4.15 15 26 H 0.11 4.51 7.48 -2.91 -0.02 4.49 15 Total: -1.00 -55.06 240.07 4.66 -50.40 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.19 Total: 11.50 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 2.92 Total: -28.92 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.40 Total: -72.66 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 17 Polarization: -2.61 SS G_CDS: -0.08 Total: -2.69 kcal Total: -55.06 4.66 -50.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306466903.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.552 kcal (2) G-P(sol) polarization free energy of solvation -55.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds