Wall clock time and date at job start Sun Mar 29 2020 22:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00070 * 2 1 4 4 C 1.53007 * 109.47219 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46773 * 65.00176 * 4 3 2 6 6 C 1.38825 * 119.99721 * 180.02562 * 5 4 3 7 7 C 1.39797 * 119.58412 * 359.97438 * 6 5 4 8 8 C 1.38590 * 119.48864 * 180.02562 * 7 6 5 9 9 C 1.38385 * 118.68645 * 0.02562 * 8 7 6 10 10 C 1.40563 * 119.14613 * 359.97438 * 9 8 7 11 11 C 1.41313 * 119.78156 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00203 * 6.43306 * 11 10 9 13 13 C 1.40023 * 119.99737 * 186.43292 * 11 10 9 14 14 N 1.30750 * 120.00001 * 176.32459 * 13 11 10 15 15 Si 1.86806 * 119.99972 * 356.05345 * 13 11 10 16 16 H 1.48501 * 109.46911 * 180.27289 * 15 13 11 17 17 H 1.48498 * 109.46717 * 300.27163 * 15 13 11 18 18 H 1.48497 * 109.47277 * 60.27102 * 15 13 11 19 19 N 1.31958 * 119.58381 * 180.30058 * 6 5 4 20 20 H 1.08999 * 109.46921 * 60.00120 * 1 2 3 21 21 H 1.08996 * 109.46974 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46613 * 300.00021 * 1 2 3 23 23 H 1.09001 * 109.46905 * 60.00328 * 3 2 1 24 24 H 1.08997 * 109.47467 * 300.00258 * 3 2 1 25 25 H 1.08998 * 109.47156 * 305.00032 * 4 3 2 26 26 H 1.09001 * 109.47069 * 185.00199 * 4 3 2 27 27 H 0.97000 * 120.00758 * 0.02562 * 5 4 3 28 28 H 1.08002 * 120.25638 * 0.04867 * 7 6 5 29 29 H 1.08007 * 120.65934 * 179.97438 * 8 7 6 30 30 H 1.08001 * 120.42947 * 180.02562 * 9 8 7 31 31 H 0.96993 * 119.99763 * 354.92649 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 5.3277 0.3494 -1.4830 7 6 6.2616 0.7285 -0.5144 8 6 7.6109 0.5133 -0.7466 9 6 7.9943 -0.0741 -1.9395 10 6 7.0075 -0.4331 -2.8740 11 6 7.3839 -1.0343 -4.0962 12 1 8.4136 -1.3115 -4.2671 13 6 6.4218 -1.2705 -5.0857 14 7 6.7813 -1.7603 -6.2435 15 14 4.6235 -0.8931 -4.7489 16 1 3.8134 -1.2354 -5.9456 17 1 4.1580 -1.6961 -3.5898 18 1 4.4697 0.5520 -4.4438 19 7 5.7155 -0.2044 -2.6163 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6886 1.8464 -0.8899 25 1 3.8515 0.5682 0.8409 26 1 3.9786 2.1765 0.0890 27 1 3.3225 0.3041 -1.9209 28 1 5.9342 1.1852 0.4079 29 1 8.3487 0.7992 -0.0114 30 1 9.0381 -0.2552 -2.1494 31 1 7.7212 -1.8910 -6.4440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308610724.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:42 Heat of formation + Delta-G solvation = -27.178449 kcal Electronic energy + Delta-G solvation = -14807.056207 eV Core-core repulsion = 12280.816979 eV Total energy + Delta-G solvation = -2526.239228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83030 -37.96171 -35.21144 -33.44802 -31.16334 -30.36462 -27.98149 -26.20541 -25.24625 -22.63322 -21.77721 -20.20794 -18.25566 -16.78891 -16.65337 -15.98962 -15.28195 -14.82283 -14.41875 -13.93994 -13.75268 -13.53974 -12.76200 -12.58807 -12.29045 -11.99544 -11.72641 -11.64985 -11.20325 -10.63176 -10.58184 -10.19539 -9.79700 -9.54010 -9.45636 -8.90245 -8.40433 -7.62215 -7.14032 -6.79956 -4.70422 2.74453 2.89540 3.65663 3.67998 3.78148 3.90812 4.14583 4.53636 4.75742 4.93150 5.11714 5.21638 5.26853 5.30239 5.54416 5.63974 5.78399 5.89929 5.94271 6.34896 6.55723 6.66848 6.68451 7.04981 7.32161 7.51046 7.54343 7.67022 7.96287 8.08944 8.37365 8.54620 8.80685 9.66660 10.09051 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027175 B = 0.009384 C = 0.007158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.094267 B = 2982.977257 C = 3910.875995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.049 3.951 4 C 0.141 3.859 5 N -0.736 5.736 6 C 0.443 3.557 7 C -0.367 4.367 8 C -0.016 4.016 9 C -0.308 4.308 10 C 0.287 3.713 11 C -0.476 4.476 12 H 0.082 0.918 13 C 0.044 3.956 14 N -0.809 5.809 15 Si 1.162 2.838 16 H -0.339 1.339 17 H -0.289 1.289 18 H -0.291 1.291 19 N -0.621 5.621 20 H 0.041 0.959 21 H 0.085 0.915 22 H 0.039 0.961 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.397 0.603 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.488 5.698 10.382 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.028 4.028 4 C 0.015 3.985 5 N -0.373 5.373 6 C 0.205 3.795 7 C -0.393 4.393 8 C -0.040 4.040 9 C -0.330 4.330 10 C 0.163 3.837 11 C -0.508 4.508 12 H 0.100 0.900 13 C -0.177 4.177 14 N -0.431 5.431 15 Si 0.999 3.001 16 H -0.274 1.274 17 H -0.217 1.217 18 H -0.220 1.220 19 N -0.350 5.350 20 H 0.060 0.940 21 H 0.104 0.896 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.232 0.768 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.292 5.238 9.264 15.517 hybrid contribution 1.998 0.448 1.090 2.319 sum -9.294 5.687 10.354 15.031 Atomic orbital electron populations 1.22744 0.81245 1.02827 0.99750 1.88000 1.19489 1.27510 1.95346 1.22833 0.93826 0.85276 1.00849 1.21188 0.91101 0.98178 0.88001 1.44187 1.04277 1.68953 1.19858 1.18070 0.83795 0.88250 0.89345 1.20455 0.93191 1.23362 1.02268 1.20698 0.94506 0.93652 0.95181 1.21382 0.98698 1.15118 0.97828 1.18265 0.85546 0.87413 0.92451 1.20746 0.97788 1.34091 0.98198 0.90034 1.27820 1.09693 0.88983 0.91166 1.70661 1.21519 1.28639 1.22270 0.81642 0.69760 0.77696 0.70963 1.27374 1.21694 1.21994 1.65760 1.18621 1.29588 1.21026 0.94044 0.89618 0.94276 0.91992 0.92612 0.91686 0.91062 0.76812 0.88202 0.88196 0.88148 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.27 10.65 -35.23 -0.38 -5.64 16 3 C 0.05 0.57 6.07 37.16 0.23 0.80 16 4 C 0.14 2.03 5.27 -4.04 -0.02 2.01 16 5 N -0.74 -14.41 5.67 -60.39 -0.34 -14.75 16 6 C 0.44 10.41 7.65 -155.32 -1.19 9.22 16 7 C -0.37 -7.98 9.34 -38.87 -0.36 -8.34 16 8 C -0.02 -0.36 10.15 -39.40 -0.40 -0.76 16 9 C -0.31 -7.62 9.83 -38.65 -0.38 -8.00 16 10 C 0.29 7.90 6.42 -85.00 -0.55 7.35 16 11 C -0.48 -13.57 9.57 -37.74 -0.36 -13.93 16 12 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 13 C 0.04 1.25 5.52 -17.34 -0.10 1.16 16 14 N -0.81 -22.86 13.65 55.55 0.76 -22.11 16 15 Si 1.16 29.97 25.45 -169.99 -4.33 25.65 16 16 H -0.34 -8.62 7.11 56.52 0.40 -8.22 16 17 H -0.29 -7.52 6.97 56.52 0.39 -7.12 16 18 H -0.29 -7.49 6.91 56.52 0.39 -7.10 16 19 N -0.62 -16.59 4.55 -10.33 -0.05 -16.64 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 26 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 27 H 0.40 7.85 8.59 -40.82 -0.35 7.50 16 28 H 0.10 1.86 6.68 -52.49 -0.35 1.51 16 29 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 30 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.28 7.60 8.72 -40.82 -0.36 7.24 16 LS Contribution 266.50 15.07 4.02 4.02 Total: -1.00 -31.56 266.50 -6.41 -37.97 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.08 Total: 0.57 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.02 Total: -9.07 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.37 Total: -53.49 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.38 Total: -5.64 kcal Atomic # 14 Polarization: 29.97 SS G_CDS: -4.33 Total: 25.65 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.56 -6.41 -37.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308610724.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.791 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds