Wall clock time and date at job start Sun Mar 29 2020 22:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 115.56266 * 2 1 4 4 C 1.53004 * 117.49783 * 214.31770 * 2 1 3 5 5 C 1.52999 * 60.00051 * 252.50792 * 4 2 1 6 6 H 1.08998 * 117.51986 * 252.51923 * 5 4 2 7 7 N 1.46903 * 117.49857 * 107.48595 * 5 4 2 8 8 C 1.46897 * 110.99635 * 136.38143 * 7 5 4 9 9 C 1.53001 * 109.47015 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47427 * 54.99992 * 9 8 7 11 11 C 1.47202 * 109.46998 * 294.99760 * 9 8 7 12 12 N 5.54221 * 64.68275 * 120.49277 * 2 1 3 13 13 C 1.53001 * 109.47345 * 174.99810 * 9 8 7 14 14 C 1.50694 * 109.47168 * 184.99962 * 13 9 8 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 9 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 9 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 H 1.08996 * 109.46976 * 274.30492 * 1 2 3 23 23 H 1.08998 * 109.47435 * 34.30879 * 1 2 3 24 24 H 1.09007 * 109.47219 * 154.30595 * 1 2 3 25 25 H 1.08998 * 109.47711 * 205.69075 * 3 2 1 26 26 H 1.08995 * 109.47419 * 325.69789 * 3 2 1 27 27 H 1.09002 * 109.46426 * 85.69159 * 3 2 1 28 28 H 1.08998 * 117.49651 * 145.02093 * 4 2 1 29 29 H 1.08999 * 117.50043 * 359.97438 * 4 2 1 30 30 H 1.00903 * 110.99826 * 260.33350 * 7 5 4 31 31 H 1.08997 * 109.47358 * 60.00244 * 8 7 5 32 32 H 1.09001 * 109.47235 * 300.00355 * 8 7 5 33 33 H 1.09007 * 109.46922 * 64.99664 * 13 9 8 34 34 H 1.09003 * 109.46836 * 305.00420 * 13 9 8 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1209 -0.7652 5 6 2.2365 -1.1211 0.7648 6 1 3.1713 -0.8752 1.2684 7 7 1.3938 -2.1151 1.4431 8 6 2.1100 -2.7335 2.5667 9 6 1.2026 -3.7610 3.2462 10 1 0.8504 -4.4801 2.5067 11 6 0.0495 -3.0738 3.8504 12 7 -0.8400 -2.5422 4.3170 13 6 1.9881 -4.4934 4.3360 14 6 1.1336 -5.5879 4.9215 15 1 0.1308 -5.7457 4.5530 16 6 1.6322 -6.3879 5.9278 17 7 2.8535 -6.1961 6.3762 18 14 0.5727 -7.7442 6.6541 19 1 1.3352 -8.4551 7.7117 20 1 -0.6554 -7.1517 7.2421 21 1 0.1965 -8.7043 5.5856 22 1 -0.3633 0.0771 1.0247 23 1 -0.3634 0.8488 -0.5792 24 1 -0.3634 -0.9261 -0.4456 25 1 3.1824 1.3085 -0.4455 26 1 1.5812 2.0743 -0.5791 27 1 2.2772 1.7412 1.0248 28 1 3.1715 -0.8750 -1.2684 29 1 1.6112 -1.8586 -1.2682 30 1 0.5253 -1.7034 1.7504 31 1 2.3909 -1.9643 3.2860 32 1 3.0071 -3.2299 2.1967 33 1 2.2642 -3.7889 5.1206 34 1 2.8897 -4.9279 3.9041 35 1 3.2041 -6.7587 7.0844 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308648101.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:39 Heat of formation + Delta-G solvation = 27.382001 kcal Electronic energy + Delta-G solvation = -14618.024189 eV Core-core repulsion = 12229.983974 eV Total energy + Delta-G solvation = -2388.040215 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.90135 -36.85267 -34.36986 -33.13944 -31.07552 -28.81786 -27.65627 -26.21813 -22.96081 -21.89084 -21.13905 -19.01053 -16.73209 -16.52581 -15.72950 -15.37107 -14.63627 -14.14700 -13.68731 -13.32253 -13.10872 -13.04135 -12.57811 -12.46581 -12.30431 -12.07277 -11.80178 -11.64075 -11.30800 -11.20973 -11.00846 -10.79130 -10.58155 -10.47970 -10.18860 -9.76517 -9.46788 -9.22275 -8.44964 -8.16828 -6.09293 -4.12526 3.31683 3.35743 3.39395 3.54410 3.60055 3.71638 4.08579 4.41924 4.68120 4.79018 4.80960 4.99506 5.18655 5.28659 5.46427 5.50310 5.53007 5.69316 5.73234 5.81607 5.83257 5.85409 5.96714 6.05640 6.15977 6.27576 6.39266 6.54150 7.16406 7.41226 7.44480 7.52937 7.85509 8.23205 8.38784 8.91715 9.52857 11.01585 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.050766 B = 0.005196 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.421469 B = 5387.722574 C = 5641.251025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.147 4.147 3 C -0.114 4.114 4 C -0.160 4.160 5 C 0.027 3.973 6 H 0.100 0.900 7 N -0.661 5.661 8 C 0.069 3.931 9 C 0.006 3.994 10 H 0.111 0.889 11 C 0.240 3.760 12 N -0.476 5.476 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.286 1.286 20 H -0.277 1.277 21 H -0.275 1.275 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.340 0.660 31 H 0.036 0.964 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.040 0.960 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 10.536 -12.856 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.149 4.149 3 C -0.171 4.171 4 C -0.199 4.199 5 C -0.084 4.084 6 H 0.118 0.882 7 N -0.292 5.292 8 C -0.061 4.061 9 C -0.016 4.016 10 H 0.129 0.871 11 C -0.076 4.076 12 N -0.153 5.153 13 C -0.006 4.006 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.212 1.212 20 H -0.203 1.203 21 H -0.200 1.200 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.160 0.840 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.035 10.754 -12.438 16.442 hybrid contribution -0.182 -0.371 1.024 1.104 sum -0.217 10.383 -11.414 15.432 Atomic orbital electron populations 1.21256 0.92081 1.02189 1.01661 1.21888 0.95177 0.91374 1.06424 1.21349 0.99874 0.94207 1.01690 1.23398 1.01747 1.00131 0.94575 1.22533 0.97813 0.94430 0.93594 0.88217 1.60329 1.06768 1.32367 1.29748 1.22134 0.97199 0.96204 0.90544 1.19346 0.88288 0.95086 0.98862 0.87105 1.29360 0.93889 0.92170 0.92189 1.81053 1.12062 1.11621 1.10603 1.19159 0.95225 0.94708 0.91477 1.21110 1.00171 1.15639 1.19632 0.92551 1.24951 0.94994 0.97524 0.96453 1.69930 1.15310 1.39574 1.28237 0.86647 0.80452 0.82009 0.78933 1.21179 1.20272 1.20002 0.92605 0.92296 0.91750 0.92467 0.92261 0.92480 0.89085 0.88323 0.83960 0.94574 0.88883 0.95747 0.94156 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.79 37.16 0.33 -0.87 16 2 C -0.15 -1.55 2.70 -154.51 -0.42 -1.96 16 3 C -0.11 -1.01 9.85 37.16 0.37 -0.65 16 4 C -0.16 -1.69 9.75 -26.73 -0.26 -1.95 16 5 C 0.03 0.32 5.96 -67.71 -0.40 -0.08 16 6 H 0.10 1.15 7.90 -51.93 -0.41 0.74 16 7 N -0.66 -9.14 6.56 -106.73 -0.70 -9.84 16 8 C 0.07 1.05 4.97 -3.83 -0.02 1.03 16 9 C 0.01 0.11 2.42 -93.40 -0.23 -0.11 16 10 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 11 C 0.24 4.92 12.98 -20.74 -0.27 4.65 16 12 N -0.48 -10.45 18.54 42.17 0.78 -9.67 16 13 C 0.03 0.77 4.42 -27.89 -0.12 0.64 16 14 C -0.53 -14.11 8.60 -34.44 -0.30 -14.41 16 15 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H 0.06 0.63 7.59 -51.93 -0.39 0.23 16 23 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 24 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 25 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 26 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 30 H 0.34 4.90 6.27 -39.29 -0.25 4.65 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 299.39 15.07 4.51 4.51 Total: -1.00 -28.97 299.39 -6.71 -35.68 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.60 Total: -0.08 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.42 Total: -12.08 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.82 Total: -44.39 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.97 -6.71 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308648101.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.067 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds