Wall clock time and date at job start Sun Mar 29 2020 21:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41382 * 126.80336 * 2 1 4 4 C 1.35451 * 103.98361 * 179.89079 * 3 2 1 5 5 C 1.50700 * 126.77148 * 180.10124 * 4 3 2 6 6 H 1.08999 * 110.33233 * 22.53750 * 5 4 3 7 7 C 1.54912 * 110.36590 * 260.29640 * 5 4 3 8 8 C 1.55158 * 101.58413 * 204.15449 * 7 5 4 9 9 C 1.54326 * 102.93892 * 35.50267 * 8 7 5 10 10 N 1.47026 * 107.27382 * 337.80673 * 9 8 7 11 11 C 1.36936 * 125.64574 * 178.97409 * 10 9 8 12 12 H 1.08004 * 119.99306 * 179.97438 * 11 10 9 13 13 C 1.38810 * 120.00420 * 359.96595 * 11 10 9 14 14 N 1.31622 * 119.99890 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00071 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47505 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47201 * 119.99722 * 15 13 11 18 18 H 1.48505 * 109.47246 * 239.99730 * 15 13 11 19 19 O 1.34042 * 106.44814 * 0.36696 * 4 3 2 20 20 N 1.20923 * 111.56325 * 359.75355 * 19 4 3 21 21 H 1.09002 * 109.47152 * 269.70703 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.70803 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.70784 * 1 2 3 24 24 H 1.07997 * 128.00331 * 0.02619 * 3 2 1 25 25 H 1.08998 * 111.00506 * 322.22973 * 7 5 4 26 26 H 1.09002 * 111.00388 * 86.04040 * 7 5 4 27 27 H 1.08992 * 110.71973 * 153.86389 * 8 7 5 28 28 H 1.09004 * 110.71712 * 276.96353 * 8 7 5 29 29 H 1.09003 * 109.88220 * 97.22786 * 9 8 7 30 30 H 1.09001 * 109.87912 * 218.23474 * 9 8 7 31 31 H 0.96993 * 120.00005 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 0.0025 5 6 4.9022 1.3695 0.0058 6 1 4.7501 2.3752 0.3977 7 6 5.4942 1.4320 -1.4244 8 6 7.0025 1.6438 -1.1283 9 6 7.2239 0.8096 0.1510 10 7 5.9152 0.6537 0.8026 11 6 5.6768 -0.0408 1.9584 12 1 4.6750 -0.0961 2.3582 13 6 6.7226 -0.6737 2.6161 14 7 7.9433 -0.6068 2.1285 15 14 6.3975 -1.6204 4.1932 16 1 4.9528 -1.5434 4.5280 17 1 6.7878 -3.0411 4.0072 18 1 7.1935 -1.0291 5.2986 19 8 3.4538 -0.7254 -0.0044 20 7 2.2868 -1.0423 -0.0058 21 1 -0.3633 -0.0053 1.0277 22 1 -0.3633 -0.8874 -0.5184 23 1 -0.3633 0.8926 -0.5093 24 1 2.0710 2.1743 0.0004 25 1 5.3284 0.4956 -1.9572 26 1 5.0827 2.2739 -1.9812 27 1 7.6133 1.2637 -1.9470 28 1 7.2156 2.6973 -0.9468 29 1 7.6272 -0.1689 -0.1096 30 1 7.9128 1.3288 0.8174 31 1 8.6740 -1.0494 2.5878 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334297777.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:54 Heat of formation + Delta-G solvation = 81.862348 kcal Electronic energy + Delta-G solvation = -15445.962207 eV Core-core repulsion = 12924.451343 eV Total energy + Delta-G solvation = -2521.510864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.21769 -37.55844 -34.21792 -32.66052 -31.63588 -29.33698 -28.26366 -27.25919 -24.55412 -22.45252 -21.38113 -20.13161 -19.05370 -17.20182 -16.82726 -15.93963 -15.30410 -14.67363 -13.96353 -13.41247 -13.16127 -13.04606 -12.58272 -12.49218 -12.39469 -11.85639 -11.64454 -11.02463 -10.85334 -10.81390 -10.61683 -10.09211 -9.98346 -9.93968 -9.69693 -9.47431 -8.75258 -8.56994 -6.93227 -5.73673 -3.08920 2.14843 2.73934 3.40930 3.47548 3.49919 3.82609 4.48349 4.65539 4.90556 5.32466 5.38699 5.48208 5.58844 5.61597 5.65952 5.70851 5.76003 5.92251 6.02007 6.18076 6.28089 6.30394 6.48013 6.58075 6.62200 6.81047 7.53524 7.60324 7.82596 8.20110 8.93420 9.18144 9.76738 10.38949 11.37673 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.011714 C = 0.008335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.437833 B = 2389.788401 C = 3358.421011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.000 4.000 3 C -0.264 4.264 4 C 0.016 3.984 5 C 0.227 3.773 6 H 0.067 0.933 7 C -0.124 4.124 8 C -0.145 4.145 9 C 0.175 3.825 10 N -0.592 5.592 11 C -0.225 4.225 12 H 0.075 0.925 13 C -0.002 4.002 14 N -0.918 5.918 15 Si 0.910 3.090 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.290 1.290 19 O 0.123 5.877 20 N -0.383 5.383 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.162 0.838 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.255 5.462 -6.288 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.158 4.158 3 C -0.287 4.287 4 C -0.051 4.051 5 C 0.117 3.883 6 H 0.085 0.915 7 C -0.162 4.162 8 C -0.184 4.184 9 C 0.051 3.949 10 N -0.318 5.318 11 C -0.353 4.353 12 H 0.093 0.907 13 C -0.198 4.198 14 N -0.565 5.565 15 Si 0.741 3.259 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.217 1.217 19 O 0.058 5.942 20 N -0.088 5.088 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.180 0.820 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.323 3.987 -6.119 11.073 hybrid contribution -0.274 0.331 0.951 1.043 sum -8.598 4.318 -5.168 10.922 Atomic orbital electron populations 1.20047 0.86788 1.02953 1.02762 1.23459 0.98505 0.89438 1.04419 1.22277 0.91422 1.00557 1.14457 1.25528 0.98636 0.83516 0.97381 1.20082 0.82819 0.92855 0.92523 0.91550 1.22768 0.96666 1.01376 0.95424 1.22879 0.94833 1.00469 1.00206 1.21227 0.87074 0.97609 0.89022 1.44597 1.02164 1.59777 1.25224 1.18973 0.94068 1.24548 0.97707 0.90721 1.24760 0.95430 1.00410 0.99226 1.69974 0.98967 1.47622 1.39978 0.86063 0.77436 0.79599 0.82823 1.20526 1.21543 1.21665 1.84940 1.20169 1.23068 1.66062 1.73822 0.90113 1.24613 1.20211 0.90772 0.91137 0.90599 0.82007 0.91269 0.91586 0.91794 0.92232 0.93180 0.93396 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.47 36.01 0.38 -0.46 16 2 C 0.00 0.01 7.33 -82.10 -0.60 -0.60 16 3 C -0.26 -4.54 11.06 -39.38 -0.44 -4.97 16 4 C 0.02 0.31 5.46 -35.30 -0.19 0.12 16 5 C 0.23 4.55 3.71 -67.57 -0.25 4.30 16 6 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 7 C -0.12 -2.10 6.49 -24.58 -0.16 -2.26 16 8 C -0.15 -2.58 6.95 -24.89 -0.17 -2.75 16 9 C 0.17 4.13 5.37 -3.06 -0.02 4.11 16 10 N -0.59 -14.80 3.30 -163.90 -0.54 -15.34 16 11 C -0.23 -6.28 9.28 -15.06 -0.14 -6.42 16 12 H 0.07 2.11 7.45 -52.48 -0.39 1.72 16 13 C 0.00 -0.05 5.49 -17.43 -0.10 -0.14 16 14 N -0.92 -26.82 10.31 55.49 0.57 -26.25 16 15 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 O 0.12 2.79 10.75 17.17 0.18 2.97 16 20 N -0.38 -8.05 12.07 33.42 0.40 -7.64 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 25 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 30 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 262.66 15.07 3.96 3.96 Total: -1.00 -31.06 262.66 -6.23 -37.30 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -4.10 Total: -3.62 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.69 Total: -9.07 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.43 Total: -49.23 kcal Atomic # 8 Polarization: 2.79 SS G_CDS: 0.18 Total: 2.97 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.06 -6.23 -37.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334297777.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.158 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds