Wall clock time and date at job start Sun Mar 29 2020 22:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47079 * 2 1 4 4 C 1.36970 * 119.99758 * 82.69318 * 3 2 1 5 5 H 1.08002 * 120.00071 * 170.53302 * 4 3 2 6 6 C 1.38975 * 120.00151 * 350.53720 * 4 3 2 7 7 N 1.31411 * 119.99940 * 4.74746 * 6 4 3 8 8 Si 1.86798 * 119.99907 * 184.74328 * 6 4 3 9 9 H 1.48499 * 109.47058 * 90.00258 * 8 6 4 10 10 H 1.48504 * 109.46992 * 210.00256 * 8 6 4 11 11 H 1.48499 * 109.47540 * 329.99855 * 8 6 4 12 12 C 1.34770 * 120.00031 * 262.69634 * 3 2 1 13 13 O 1.21654 * 120.00334 * 4.00029 * 12 3 2 14 14 C 1.47188 * 119.99737 * 184.00354 * 12 3 2 15 15 C 1.37830 * 127.01966 * 316.26431 * 14 12 3 16 16 N 1.34704 * 108.19732 * 180.02562 * 15 14 12 17 17 H 0.97007 * 124.81273 * 179.97438 * 16 15 14 18 18 C 1.36420 * 110.36485 * 0.26987 * 16 15 14 19 19 C 1.34454 * 109.08639 * 359.54998 * 18 16 15 20 20 C 1.50699 * 126.80869 * 180.19699 * 19 18 16 21 21 H 1.09001 * 109.47631 * 59.99804 * 1 2 3 22 22 H 1.09002 * 109.47035 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47042 * 299.99478 * 1 2 3 24 24 H 1.08996 * 109.46929 * 240.00179 * 2 1 3 25 25 H 1.08993 * 109.47344 * 119.99978 * 2 1 3 26 26 H 0.97000 * 120.00447 * 180.02562 * 7 6 4 27 27 H 1.08005 * 125.90275 * 0.05813 * 15 14 12 28 28 H 1.07998 * 125.45742 * 179.71582 * 18 16 15 29 29 H 1.08995 * 109.47110 * 270.27480 * 20 19 18 30 30 H 1.09003 * 109.46729 * 30.27710 * 20 19 18 31 31 H 1.08999 * 109.46885 * 150.27043 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1044 2.0772 1.1766 5 1 2.6038 3.0345 1.2025 6 6 1.5491 1.5515 2.3371 7 7 1.0242 0.3468 2.3271 8 14 1.5490 2.5573 3.9111 9 1 0.3068 3.3680 3.9805 10 1 1.6108 1.6452 5.0814 11 1 2.7295 3.4582 3.9231 12 6 2.3828 1.9671 -1.1577 13 8 2.2383 1.3755 -2.2108 14 6 2.9560 3.3228 -1.1478 15 6 2.5119 4.4062 -0.4207 16 7 3.3110 5.4547 -0.6976 17 1 3.2139 6.3411 -0.3155 18 6 4.2721 5.0948 -1.5963 19 6 4.1162 3.7968 -1.9106 20 6 4.9619 2.9903 -2.8621 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 0.6362 -0.0200 3.1369 27 1 1.6693 4.4132 0.2548 28 1 5.0375 5.7472 -1.9901 29 1 4.5468 3.0622 -3.8674 30 1 5.9805 3.3783 -2.8610 31 1 4.9701 1.9472 -2.5461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334415025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:03 Heat of formation + Delta-G solvation = 28.256529 kcal Electronic energy + Delta-G solvation = -15487.400646 eV Core-core repulsion = 12963.565259 eV Total energy + Delta-G solvation = -2523.835387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37191 -37.94833 -34.89642 -31.83602 -31.34520 -30.25591 -28.22423 -25.98052 -24.79901 -22.66062 -20.61650 -19.11437 -18.54128 -17.77497 -16.08127 -15.57229 -14.25318 -14.10350 -13.81230 -13.32205 -13.06483 -12.82511 -12.41663 -12.18801 -12.15645 -11.73761 -11.49744 -11.24671 -10.93908 -10.74693 -10.55089 -10.35945 -10.04298 -9.77866 -8.73957 -8.33663 -7.82805 -7.62350 -7.45024 -6.12991 -3.78146 2.77856 3.06054 3.19210 3.20996 3.21733 3.84054 4.10581 4.37403 5.07357 5.23995 5.55773 5.73984 5.90810 5.99533 6.31802 6.39751 6.61955 6.68997 6.79148 6.85851 6.95772 7.06789 7.21904 7.42718 7.53040 7.65174 7.69665 7.90500 7.98953 8.09100 8.61278 9.17943 9.72449 10.12361 10.71988 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.011947 C = 0.008887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.056833 B = 2343.099879 C = 3150.081168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.130 3.870 3 N -0.440 5.440 4 C -0.318 4.318 5 H 0.107 0.893 6 C 0.024 3.976 7 N -0.870 5.870 8 Si 0.922 3.078 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.610 6.610 14 C -0.175 4.175 15 C 0.031 3.969 16 N -0.562 5.562 17 H 0.408 0.592 18 C -0.041 4.041 19 C -0.131 4.131 20 C -0.071 4.071 21 H 0.016 0.984 22 H 0.030 0.970 23 H 0.084 0.916 24 H 0.033 0.967 25 H 0.113 0.887 26 H 0.263 0.737 27 H 0.176 0.824 28 H 0.157 0.843 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 7.857 -0.932 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.008 3.992 3 N -0.157 5.157 4 C -0.446 4.446 5 H 0.124 0.876 6 C -0.178 4.178 7 N -0.512 5.512 8 Si 0.749 3.251 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.498 6.498 14 C -0.185 4.185 15 C -0.102 4.102 16 N -0.157 5.157 17 H 0.243 0.757 18 C -0.169 4.169 19 C -0.138 4.138 20 C -0.128 4.128 21 H 0.035 0.965 22 H 0.049 0.951 23 H 0.102 0.898 24 H 0.051 0.949 25 H 0.130 0.870 26 H 0.075 0.925 27 H 0.193 0.807 28 H 0.174 0.826 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.378 7.510 -1.210 8.323 hybrid contribution -0.163 0.904 1.195 1.507 sum 3.214 8.414 -0.016 9.007 Atomic orbital electron populations 1.22102 0.97231 0.99112 1.00707 1.21510 0.94209 0.82803 1.00722 1.43755 1.54616 1.11987 1.05365 1.20066 1.34414 1.04402 0.85759 0.87583 1.25253 0.96804 0.96378 0.99333 1.70199 1.38624 1.14507 1.27837 0.85992 0.78473 0.79314 0.81286 1.20503 1.20884 1.19736 1.17205 0.82920 0.85177 0.83632 1.90594 1.61802 1.66224 1.31169 1.20721 1.00204 0.94496 1.03079 1.22397 0.98622 0.86706 1.02512 1.41414 1.25648 1.11798 1.36804 0.75691 1.21252 0.98347 0.96657 1.00635 1.20476 0.98377 0.93299 1.01686 1.20003 0.96286 0.99393 0.97118 0.96530 0.95070 0.89794 0.94905 0.86980 0.92544 0.80682 0.82591 0.92229 0.93086 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.46 37.16 0.35 -2.91 16 2 C 0.13 3.38 5.47 -4.04 -0.02 3.36 16 3 N -0.44 -11.71 2.64 -116.11 -0.31 -12.01 16 4 C -0.32 -8.11 8.63 -14.98 -0.13 -8.24 16 5 H 0.11 2.56 4.73 -52.49 -0.25 2.31 16 6 C 0.02 0.59 5.20 -17.46 -0.09 0.50 16 7 N -0.87 -22.11 7.26 55.50 0.40 -21.70 16 8 Si 0.92 19.24 29.56 -169.99 -5.02 14.21 16 9 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 12 C 0.52 13.85 7.49 -12.63 -0.09 13.76 16 13 O -0.61 -17.67 16.62 5.23 0.09 -17.58 16 14 C -0.18 -3.98 5.55 -102.99 -0.57 -4.56 16 15 C 0.03 0.59 9.61 -16.44 -0.16 0.44 16 16 N -0.56 -8.41 5.90 -12.59 -0.07 -8.48 16 17 H 0.41 4.34 8.96 -40.82 -0.37 3.97 16 18 C -0.04 -0.65 11.80 -16.85 -0.20 -0.85 16 19 C -0.13 -2.56 6.36 -102.53 -0.65 -3.21 16 20 C -0.07 -1.24 10.35 36.01 0.37 -0.87 16 21 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 2.15 5.88 -51.93 -0.31 1.85 16 24 H 0.03 0.86 7.27 -51.93 -0.38 0.49 16 25 H 0.11 3.01 5.86 -51.93 -0.30 2.70 16 26 H 0.26 6.37 8.31 -40.82 -0.34 6.03 16 27 H 0.18 3.21 7.13 -52.48 -0.37 2.84 16 28 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 260.12 15.07 3.92 3.92 Total: -1.00 -30.94 260.12 -5.83 -36.78 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -3.65 Total: 7.44 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.19 Total: -2.57 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.02 Total: -42.20 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.09 Total: -17.58 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.94 -5.83 -36.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334415025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.034 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds