Wall clock time and date at job start Sun Mar 29 2020 22:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47079 * 2 1 4 4 C 1.36970 * 119.99758 * 82.69318 * 3 2 1 5 5 H 1.08002 * 120.00071 * 170.53302 * 4 3 2 6 6 C 1.38975 * 120.00151 * 350.53720 * 4 3 2 7 7 N 1.31411 * 119.99940 * 4.74746 * 6 4 3 8 8 Si 1.86798 * 119.99907 * 184.74328 * 6 4 3 9 9 H 1.48499 * 109.47058 * 90.00258 * 8 6 4 10 10 H 1.48504 * 109.46992 * 210.00256 * 8 6 4 11 11 H 1.48499 * 109.47540 * 329.99855 * 8 6 4 12 12 C 1.34770 * 120.00031 * 262.69634 * 3 2 1 13 13 O 1.21654 * 120.00334 * 4.00029 * 12 3 2 14 14 C 1.47188 * 119.99737 * 184.00354 * 12 3 2 15 15 C 1.37830 * 127.01966 * 316.26431 * 14 12 3 16 16 N 1.34704 * 108.19732 * 180.02562 * 15 14 12 17 17 H 0.97007 * 124.81273 * 179.97438 * 16 15 14 18 18 C 1.36420 * 110.36485 * 0.26987 * 16 15 14 19 19 C 1.34454 * 109.08639 * 359.54998 * 18 16 15 20 20 C 1.50699 * 126.80869 * 180.19699 * 19 18 16 21 21 H 1.09001 * 109.47631 * 59.99804 * 1 2 3 22 22 H 1.09002 * 109.47035 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47042 * 299.99478 * 1 2 3 24 24 H 1.08996 * 109.46929 * 240.00179 * 2 1 3 25 25 H 1.08993 * 109.47344 * 119.99978 * 2 1 3 26 26 H 0.97000 * 120.00447 * 180.02562 * 7 6 4 27 27 H 1.08005 * 125.90275 * 0.05813 * 15 14 12 28 28 H 1.07998 * 125.45742 * 179.71582 * 18 16 15 29 29 H 1.08995 * 109.47110 * 270.27480 * 20 19 18 30 30 H 1.09003 * 109.46729 * 30.27710 * 20 19 18 31 31 H 1.08999 * 109.46885 * 150.27043 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1044 2.0772 1.1766 5 1 2.6038 3.0345 1.2025 6 6 1.5491 1.5515 2.3371 7 7 1.0242 0.3468 2.3271 8 14 1.5490 2.5573 3.9111 9 1 0.3068 3.3680 3.9805 10 1 1.6108 1.6452 5.0814 11 1 2.7295 3.4582 3.9231 12 6 2.3828 1.9671 -1.1577 13 8 2.2383 1.3755 -2.2108 14 6 2.9560 3.3228 -1.1478 15 6 2.5119 4.4062 -0.4207 16 7 3.3110 5.4547 -0.6976 17 1 3.2139 6.3411 -0.3155 18 6 4.2721 5.0948 -1.5963 19 6 4.1162 3.7968 -1.9106 20 6 4.9619 2.9903 -2.8621 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 0.6362 -0.0200 3.1369 27 1 1.6693 4.4132 0.2548 28 1 5.0375 5.7472 -1.9901 29 1 4.5468 3.0622 -3.8674 30 1 5.9805 3.3783 -2.8610 31 1 4.9701 1.9472 -2.5461 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334415025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:03 Heat of formation + Delta-G solvation = 8.388627 kcal Electronic energy + Delta-G solvation = -15488.262183 eV Core-core repulsion = 12963.565259 eV Total energy + Delta-G solvation = -2524.696924 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80851 -39.88736 -36.91869 -33.32143 -33.22560 -32.13446 -29.88117 -27.34595 -26.74359 -24.54266 -22.40471 -20.76238 -20.24340 -19.18435 -17.90721 -17.38157 -16.16281 -15.85312 -15.51407 -14.93719 -14.70894 -14.45366 -14.17664 -13.88015 -13.54169 -13.39636 -13.24604 -12.99010 -12.73914 -12.51911 -12.17186 -12.10182 -11.94417 -11.74761 -10.74928 -10.35259 -9.68412 -9.23047 -8.90008 -8.04523 -5.76583 1.20935 1.50146 1.51281 1.61214 1.71129 2.33658 2.51846 2.60430 3.21408 3.34060 4.25132 4.42770 4.45023 4.60692 4.65935 4.88371 4.92319 4.95395 5.02128 5.14771 5.25438 5.26425 5.43137 5.49411 5.65227 5.86551 5.96325 6.05796 6.21616 6.63186 6.94019 7.22336 7.74316 8.14283 8.82217 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.011947 C = 0.008887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.056833 B = 2343.099879 C = 3150.081168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.131 3.869 3 N -0.451 5.451 4 C -0.341 4.341 5 H 0.118 0.882 6 C -0.016 4.016 7 N -0.892 5.892 8 Si 0.995 3.005 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.262 1.262 12 C 0.505 3.495 13 O -0.653 6.653 14 C -0.231 4.231 15 C 0.040 3.960 16 N -0.537 5.537 17 H 0.434 0.566 18 C -0.004 4.004 19 C -0.173 4.173 20 C -0.065 4.065 21 H 0.004 0.996 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.016 0.984 25 H 0.104 0.896 26 H 0.266 0.734 27 H 0.179 0.821 28 H 0.209 0.791 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.417 10.756 0.250 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.008 3.992 3 N -0.167 5.167 4 C -0.468 4.468 5 H 0.136 0.864 6 C -0.216 4.216 7 N -0.533 5.533 8 Si 0.819 3.181 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.186 1.186 12 C 0.297 3.703 13 O -0.544 6.544 14 C -0.241 4.241 15 C -0.096 4.096 16 N -0.133 5.133 17 H 0.274 0.726 18 C -0.133 4.133 19 C -0.180 4.180 20 C -0.123 4.123 21 H 0.023 0.977 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.035 0.965 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.196 0.804 28 H 0.226 0.774 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.249 10.448 -0.012 11.279 hybrid contribution -0.421 -0.006 0.823 0.924 sum 3.827 10.442 0.810 11.151 Atomic orbital electron populations 1.21927 0.96041 1.00105 0.99450 1.21458 0.95177 0.83272 0.99333 1.44004 1.54556 1.11974 1.06157 1.20431 1.35594 1.05116 0.85653 0.86426 1.26145 0.95884 0.97343 1.02199 1.70294 1.38525 1.15675 1.28774 0.84887 0.78919 0.77746 0.76572 1.19682 1.21188 1.18613 1.17930 0.82648 0.86824 0.82945 1.90526 1.63571 1.67837 1.32460 1.20701 1.02982 0.93548 1.06839 1.22266 0.98786 0.86905 1.01617 1.41391 1.24149 1.12073 1.35724 0.72606 1.21878 0.97746 0.95503 0.98139 1.20809 0.98633 0.95363 1.03179 1.19962 0.98360 0.97356 0.96586 0.97734 0.93015 0.90707 0.96546 0.87802 0.92319 0.80359 0.77445 0.92429 0.89246 0.95436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 9.46 71.98 0.68 -5.19 16 2 C 0.13 7.07 5.47 86.38 0.47 7.55 16 3 N -0.45 -24.78 2.64 -639.50 -1.69 -26.47 16 4 C -0.34 -17.45 8.63 84.07 0.73 -16.72 16 5 H 0.12 5.61 4.73 -2.91 -0.01 5.59 16 6 C -0.02 -0.80 5.20 84.93 0.44 -0.36 16 7 N -0.89 -45.45 7.26 21.67 0.16 -45.30 16 8 Si 0.99 38.39 29.56 68.60 2.03 40.42 16 9 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 10 H -0.29 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 12 C 0.51 27.97 7.49 86.60 0.65 28.62 16 13 O -0.65 -39.98 16.62 -4.20 -0.07 -40.05 16 14 C -0.23 -10.53 5.55 -18.81 -0.10 -10.64 16 15 C 0.04 1.46 9.61 84.16 0.81 2.27 16 16 N -0.54 -13.89 5.90 -193.76 -1.14 -15.04 16 17 H 0.43 6.97 8.96 -92.70 -0.83 6.14 16 18 C 0.00 -0.10 11.80 83.11 0.98 0.88 16 19 C -0.17 -6.53 6.36 -18.51 -0.12 -6.65 16 20 C -0.07 -2.28 10.35 71.24 0.74 -1.54 16 21 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 22 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.07 3.89 5.88 -2.39 -0.01 3.88 16 24 H 0.02 0.91 7.27 -2.39 -0.02 0.89 16 25 H 0.10 5.78 5.86 -2.39 -0.01 5.77 16 26 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 27 H 0.18 6.29 7.13 -2.91 -0.02 6.27 16 28 H 0.21 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -70.01 260.12 4.88 -65.14 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.32 Total: 23.08 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.27 Total: -1.78 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -2.67 Total: -86.80 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.07 Total: -40.05 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -70.01 4.88 -65.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334415025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.524 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds