Wall clock time and date at job start Sun Mar 29 2020 22:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46753 * 2 1 4 4 C 1.50697 * 109.47545 * 120.00040 * 2 1 3 5 5 H 1.08003 * 119.99654 * 25.57054 * 4 2 1 6 6 C 1.37873 * 120.00136 * 205.56970 * 4 2 1 7 7 N 1.31512 * 120.00307 * 353.29675 * 6 4 2 8 8 Si 1.86800 * 119.99793 * 173.29288 * 6 4 2 9 9 H 1.48506 * 109.47423 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47147 * 120.00005 * 8 6 4 11 11 H 1.48501 * 109.47394 * 240.00343 * 8 6 4 12 12 N 1.46502 * 109.47201 * 240.00589 * 2 1 3 13 13 C 1.34771 * 120.00467 * 84.99738 * 12 2 1 14 14 O 1.21288 * 119.99622 * 359.97438 * 13 12 2 15 15 C 1.50694 * 120.00410 * 180.02562 * 13 12 2 16 16 C 1.47199 * 112.84980 * 50.33307 * 15 13 12 17 17 N 5.02599 * 88.23907 * 233.98357 * 2 1 3 18 18 C 1.53775 * 113.61548 * 279.13781 * 15 13 12 19 19 C 1.53957 * 87.02201 * 220.04491 * 18 15 13 20 20 C 1.53784 * 87.11091 * 25.36018 * 19 18 15 21 21 H 1.09004 * 109.46946 * 175.76161 * 1 2 3 22 22 H 1.08997 * 109.47245 * 295.76336 * 1 2 3 23 23 H 1.08997 * 109.47573 * 55.76778 * 1 2 3 24 24 H 0.97005 * 119.99628 * 354.60356 * 7 6 4 25 25 H 0.97006 * 119.99888 * 264.99919 * 12 2 1 26 26 H 1.08997 * 113.61426 * 334.56073 * 18 15 13 27 27 H 1.08999 * 113.62009 * 105.46897 * 18 15 13 28 28 H 1.08998 * 113.53666 * 270.80843 * 19 18 15 29 29 H 1.08999 * 113.74823 * 139.94038 * 19 18 15 30 30 H 1.08997 * 113.61731 * 220.08836 * 20 19 18 31 31 H 1.09005 * 113.68873 * 89.19802 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.4170 -1.4552 1.7130 6 6 3.2777 -0.4095 1.7400 7 7 4.0802 0.3979 1.0814 8 14 3.8250 -1.1487 3.3658 9 1 2.7470 -2.0178 3.9024 10 1 5.0525 -1.9573 3.1537 11 1 4.1110 -0.0593 4.3336 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8581 1.1585 -2.4116 15 6 2.6489 -0.7286 -3.5878 16 6 1.9293 -1.9843 -3.8562 17 7 1.3756 -2.9540 -4.0633 18 6 4.1791 -0.8733 -3.6346 19 6 4.0826 -0.5565 -5.1381 20 6 2.7737 0.1849 -4.8186 21 1 -0.3633 -1.0249 -0.0760 22 1 -0.3633 0.4467 0.9255 23 1 -0.3634 0.5781 -0.8496 24 1 3.8291 0.7196 0.2014 25 1 2.2491 -1.6317 -1.1528 26 1 4.7074 -0.1118 -3.0611 27 1 4.5289 -1.8835 -3.4219 28 1 3.9431 -1.4401 -5.7610 29 1 4.8767 0.0960 -5.5011 30 1 1.9906 0.0278 -5.5603 31 1 2.9157 1.2365 -4.5693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334491765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:27 Heat of formation + Delta-G solvation = -4.914461 kcal Electronic energy + Delta-G solvation = -15193.816984 eV Core-core repulsion = 12668.543195 eV Total energy + Delta-G solvation = -2525.273789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.32013 -37.60958 -35.77995 -34.90181 -32.21173 -29.82751 -27.09420 -25.73610 -24.75209 -21.76649 -21.03079 -19.94771 -18.07279 -16.80668 -16.06090 -15.24759 -14.76481 -14.16768 -13.89690 -13.68133 -13.63516 -13.15907 -12.81352 -12.68622 -12.35478 -11.88167 -11.66492 -11.29917 -11.08205 -11.05451 -10.87040 -10.81583 -10.44865 -10.25116 -10.13212 -9.25649 -8.74787 -8.67226 -7.94359 -6.59754 -4.41029 2.63544 2.71811 3.20235 3.34383 3.35231 3.50907 3.92076 4.01960 4.36450 4.48090 4.59584 4.78452 5.04945 5.27016 5.57800 5.67561 5.77899 5.86646 5.94181 5.97616 6.29806 6.31797 6.49052 6.55985 6.98673 7.17459 7.51862 7.54698 7.81656 8.22794 8.51316 8.68611 9.00895 9.38897 10.77320 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.031499 B = 0.008507 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.696357 B = 3290.733855 C = 3473.176419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.608 4.608 5 H 0.057 0.943 6 C 0.031 3.969 7 N -0.888 5.888 8 Si 1.073 2.927 9 H -0.287 1.287 10 H -0.286 1.286 11 H -0.283 1.283 12 N -0.695 5.695 13 C 0.520 3.480 14 O -0.548 6.548 15 C -0.030 4.030 16 C 0.238 3.762 17 N -0.424 5.424 18 C -0.106 4.106 19 C -0.144 4.144 20 C -0.099 4.099 21 H 0.038 0.962 22 H 0.055 0.945 23 H 0.032 0.968 24 H 0.278 0.722 25 H 0.387 0.613 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -1.805 -8.482 8.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.646 4.646 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.521 5.521 8 Si 0.901 3.099 9 H -0.213 1.213 10 H -0.213 1.213 11 H -0.209 1.209 12 N -0.343 5.343 13 C 0.302 3.698 14 O -0.427 6.427 15 C -0.037 4.037 16 C -0.080 4.080 17 N -0.099 5.099 18 C -0.145 4.145 19 C -0.181 4.181 20 C -0.137 4.137 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.089 0.911 25 H 0.220 0.780 26 H 0.127 0.873 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.353 -2.414 -7.665 8.149 hybrid contribution -0.989 -0.265 -0.991 1.425 sum 0.365 -2.679 -8.656 9.068 Atomic orbital electron populations 1.22005 0.98371 0.99729 0.99904 1.18996 0.90107 0.95105 0.82246 0.92585 1.22193 1.04684 1.26744 1.11001 0.92433 1.26023 0.93107 0.94746 1.03892 1.70690 1.38080 1.28841 1.14512 0.83491 0.75615 0.76131 0.74687 1.21290 1.21264 1.20928 1.47842 1.63104 1.13639 1.09750 1.19759 0.78751 0.87400 0.83939 1.90644 1.51496 1.15600 1.84923 1.19670 0.96966 0.88437 0.98669 1.27959 0.93360 0.93402 0.93308 1.81179 1.09029 1.11133 1.08538 1.22954 0.90013 1.04099 0.97409 1.22983 0.98307 1.00732 0.96104 1.22868 0.97762 0.99845 0.93269 0.94282 0.92621 0.94860 0.91065 0.77987 0.87342 0.90063 0.90091 0.90011 0.90650 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.46 37.16 0.35 -2.76 16 2 C 0.23 5.73 2.04 -69.08 -0.14 5.59 16 3 H 0.06 1.54 6.58 -51.93 -0.34 1.20 16 4 C -0.61 -15.83 8.49 -34.44 -0.29 -16.13 16 5 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 6 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 7 N -0.89 -24.98 13.56 55.43 0.75 -24.22 16 8 Si 1.07 23.52 29.91 -169.99 -5.08 18.43 16 9 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.70 -15.02 4.90 -54.93 -0.27 -15.29 16 13 C 0.52 10.42 6.85 -10.99 -0.08 10.34 16 14 O -0.55 -12.50 15.57 5.55 0.09 -12.41 16 15 C -0.03 -0.47 1.17 -157.64 -0.18 -0.65 16 16 C 0.24 3.85 13.74 -20.77 -0.29 3.56 16 17 N -0.42 -7.42 18.54 42.14 0.78 -6.64 16 18 C -0.11 -1.37 7.21 -25.83 -0.19 -1.56 16 19 C -0.14 -1.51 7.80 -25.82 -0.20 -1.71 16 20 C -0.10 -1.25 6.97 -25.92 -0.18 -1.43 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.28 7.90 6.93 -40.82 -0.28 7.62 16 25 H 0.39 8.00 8.27 -40.82 -0.34 7.66 16 26 H 0.11 1.49 8.09 -51.93 -0.42 1.07 16 27 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 28 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.11 1.52 7.45 -51.93 -0.39 1.13 16 LS Contribution 274.99 15.07 4.14 4.14 Total: -1.00 -29.44 274.99 -4.81 -34.25 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.93 Total: 5.74 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.29 Total: -4.01 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 1.26 Total: -46.15 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.08 Total: 18.43 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.44 -4.81 -34.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334491765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.338 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds