Wall clock time and date at job start Sun Mar 29 2020 22:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46753 * 2 1 4 4 C 1.50697 * 109.47545 * 120.00040 * 2 1 3 5 5 H 1.08003 * 119.99654 * 25.57054 * 4 2 1 6 6 C 1.37873 * 120.00136 * 205.56970 * 4 2 1 7 7 N 1.31512 * 120.00307 * 353.29675 * 6 4 2 8 8 Si 1.86800 * 119.99793 * 173.29288 * 6 4 2 9 9 H 1.48506 * 109.47423 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47147 * 120.00005 * 8 6 4 11 11 H 1.48501 * 109.47394 * 240.00343 * 8 6 4 12 12 N 1.46502 * 109.47201 * 240.00589 * 2 1 3 13 13 C 1.34771 * 120.00467 * 84.99738 * 12 2 1 14 14 O 1.21288 * 119.99622 * 359.97438 * 13 12 2 15 15 C 1.50694 * 120.00410 * 180.02562 * 13 12 2 16 16 C 1.47199 * 112.84980 * 50.33307 * 15 13 12 17 17 N 5.02599 * 88.23907 * 233.98357 * 2 1 3 18 18 C 1.53775 * 113.61548 * 279.13781 * 15 13 12 19 19 C 1.53957 * 87.02201 * 220.04491 * 18 15 13 20 20 C 1.53784 * 87.11091 * 25.36018 * 19 18 15 21 21 H 1.09004 * 109.46946 * 175.76161 * 1 2 3 22 22 H 1.08997 * 109.47245 * 295.76336 * 1 2 3 23 23 H 1.08997 * 109.47573 * 55.76778 * 1 2 3 24 24 H 0.97005 * 119.99628 * 354.60356 * 7 6 4 25 25 H 0.97006 * 119.99888 * 264.99919 * 12 2 1 26 26 H 1.08997 * 113.61426 * 334.56073 * 18 15 13 27 27 H 1.08999 * 113.62009 * 105.46897 * 18 15 13 28 28 H 1.08998 * 113.53666 * 270.80843 * 19 18 15 29 29 H 1.08999 * 113.74823 * 139.94038 * 19 18 15 30 30 H 1.08997 * 113.61731 * 220.08836 * 20 19 18 31 31 H 1.09005 * 113.68873 * 89.19802 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.4170 -1.4552 1.7130 6 6 3.2777 -0.4095 1.7400 7 7 4.0802 0.3979 1.0814 8 14 3.8250 -1.1487 3.3658 9 1 2.7470 -2.0178 3.9024 10 1 5.0525 -1.9573 3.1537 11 1 4.1110 -0.0593 4.3336 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8581 1.1585 -2.4116 15 6 2.6489 -0.7286 -3.5878 16 6 1.9293 -1.9843 -3.8562 17 7 1.3756 -2.9540 -4.0633 18 6 4.1791 -0.8733 -3.6346 19 6 4.0826 -0.5565 -5.1381 20 6 2.7737 0.1849 -4.8186 21 1 -0.3633 -1.0249 -0.0760 22 1 -0.3633 0.4467 0.9255 23 1 -0.3634 0.5781 -0.8496 24 1 3.8291 0.7196 0.2014 25 1 2.2491 -1.6317 -1.1528 26 1 4.7074 -0.1118 -3.0611 27 1 4.5289 -1.8835 -3.4219 28 1 3.9431 -1.4401 -5.7610 29 1 4.8767 0.0960 -5.5011 30 1 1.9906 0.0278 -5.5603 31 1 2.9157 1.2365 -4.5693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334491765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:26 Heat of formation + Delta-G solvation = -23.762632 kcal Electronic energy + Delta-G solvation = -15194.634302 eV Core-core repulsion = 12668.543195 eV Total energy + Delta-G solvation = -2526.091107 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.69878 -39.12393 -37.17795 -36.67309 -34.14624 -31.61797 -28.39125 -26.81169 -26.73154 -23.52443 -22.18542 -21.60012 -19.80636 -18.52862 -17.28892 -16.95175 -15.90508 -15.82178 -15.61844 -15.46624 -15.14669 -14.79759 -14.13377 -14.03652 -13.74251 -13.43598 -13.11764 -12.94707 -12.76244 -12.64054 -12.29905 -12.09480 -11.89812 -11.76054 -11.49403 -11.00766 -10.72625 -10.54195 -9.77297 -8.69950 -6.52009 1.27476 1.40872 1.57500 1.61038 1.68182 1.81568 2.41468 2.54669 2.61374 3.22162 3.37821 3.47002 3.74439 3.86109 4.33373 4.44872 4.66927 4.68850 4.69252 4.75926 4.91137 4.96575 5.07422 5.12395 5.25550 5.35703 5.66690 5.89330 6.13319 6.23033 6.45609 6.84306 7.32268 7.35491 8.66521 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.031499 B = 0.008507 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.696357 B = 3290.733855 C = 3473.176419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.237 3.763 3 H 0.017 0.983 4 C -0.617 4.617 5 H 0.057 0.943 6 C -0.013 4.013 7 N -0.913 5.913 8 Si 1.120 2.880 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.699 5.699 13 C 0.517 3.483 14 O -0.578 6.578 15 C -0.032 4.032 16 C 0.253 3.747 17 N -0.444 5.444 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.097 4.097 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.033 0.967 24 H 0.264 0.736 25 H 0.392 0.608 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 -2.846 -9.202 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.136 3.864 3 H 0.035 0.965 4 C -0.655 4.655 5 H 0.075 0.925 6 C -0.216 4.216 7 N -0.548 5.548 8 Si 0.942 3.058 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.207 1.207 12 N -0.347 5.347 13 C 0.302 3.698 14 O -0.459 6.459 15 C -0.039 4.039 16 C -0.065 4.065 17 N -0.119 5.119 18 C -0.146 4.146 19 C -0.158 4.158 20 C -0.136 4.136 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.226 0.774 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.800 -3.472 -8.413 9.277 hybrid contribution -1.196 0.100 -0.795 1.440 sum 0.604 -3.372 -9.208 9.825 Atomic orbital electron populations 1.21901 0.96616 1.00392 1.00211 1.18757 0.91452 0.93115 0.83099 0.96456 1.22392 1.04722 1.26599 1.11819 0.92465 1.27341 0.93373 0.94375 1.06469 1.70810 1.38872 1.30733 1.14348 0.82885 0.75956 0.75791 0.71181 1.19620 1.20429 1.20657 1.47443 1.63663 1.13766 1.09824 1.20373 0.77618 0.87134 0.84715 1.90625 1.52510 1.17130 1.85635 1.19752 0.98337 0.88488 0.97310 1.27926 0.92773 0.93088 0.92705 1.81201 1.09605 1.11838 1.09262 1.23034 0.87473 1.04490 0.99579 1.22933 0.97418 1.01246 0.94172 1.22946 0.99716 0.99033 0.91904 0.93246 0.92128 0.94826 0.92589 0.77374 0.88412 0.89019 0.88475 0.87561 0.89266 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 9.46 71.98 0.68 -5.14 16 2 C 0.24 11.75 2.04 44.24 0.09 11.84 16 3 H 0.02 1.00 6.58 -2.38 -0.02 0.98 16 4 C -0.62 -32.26 8.49 25.60 0.22 -32.04 16 5 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 6 C -0.01 -0.67 5.45 84.65 0.46 -0.21 16 7 N -0.91 -52.18 13.56 21.45 0.29 -51.89 16 8 Si 1.12 46.77 29.91 68.60 2.05 48.83 16 9 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 10 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 12 N -0.70 -30.47 4.90 -446.10 -2.19 -32.66 16 13 C 0.52 20.83 6.85 87.66 0.60 21.44 16 14 O -0.58 -26.88 15.57 -3.05 -0.05 -26.93 16 15 C -0.03 -0.94 1.17 -54.21 -0.06 -1.01 16 16 C 0.25 7.78 13.74 89.45 1.23 9.01 16 17 N -0.44 -14.85 18.54 20.00 0.37 -14.48 16 18 C -0.11 -2.58 7.21 31.18 0.22 -2.35 16 19 C -0.12 -2.13 7.80 31.18 0.24 -1.89 16 20 C -0.10 -2.27 6.97 31.12 0.22 -2.05 16 21 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 22 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.26 15.49 6.93 -92.70 -0.64 14.85 16 25 H 0.39 16.24 8.27 -92.70 -0.77 15.47 16 26 H 0.10 2.61 8.09 -2.39 -0.02 2.59 16 27 H 0.09 2.03 8.08 -2.39 -0.02 2.01 16 28 H 0.10 1.48 8.13 -2.39 -0.02 1.46 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.84 8.08 -2.39 -0.02 1.83 16 31 H 0.11 2.70 7.45 -2.38 -0.02 2.68 16 Total: -1.00 -63.46 274.99 4.88 -58.58 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.50 Total: 20.94 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 3.90 Total: -2.40 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -1.53 Total: -99.03 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.05 Total: -26.93 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.05 Total: 48.83 kcal Total: -63.46 4.88 -58.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334491765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.821 kcal (2) G-P(sol) polarization free energy of solvation -63.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds