Wall clock time and date at job start Sun Mar 29 2020 22:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47135 * 2 1 4 4 C 1.50703 * 109.46673 * 239.99873 * 2 1 3 5 5 H 1.08002 * 120.00087 * 239.99709 * 4 2 1 6 6 C 1.37880 * 119.99822 * 60.00928 * 4 2 1 7 7 N 1.31513 * 119.99973 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99923 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47033 * 59.98997 * 8 6 4 10 10 H 1.48497 * 109.47264 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46695 * 299.99706 * 8 6 4 12 12 N 1.46504 * 109.47147 * 120.00227 * 2 1 3 13 13 C 1.34772 * 120.00053 * 274.99911 * 12 2 1 14 14 O 1.21697 * 119.99885 * 354.41508 * 13 12 2 15 15 C 1.46672 * 120.00154 * 174.41272 * 13 12 2 16 16 C 1.37873 * 126.23486 * 4.86778 * 15 13 12 17 17 C 1.39833 * 107.08832 * 179.85069 * 16 15 13 18 18 C 1.35453 * 107.86191 * 0.41460 * 17 16 15 19 19 N 1.35530 * 108.87222 * 359.74598 * 18 17 16 20 20 C 1.46506 * 125.67528 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46884 * 299.99882 * 1 2 3 23 23 H 1.08998 * 109.46911 * 59.99886 * 1 2 3 24 24 H 0.97002 * 119.99939 * 180.02562 * 7 6 4 25 25 H 0.97000 * 119.99743 * 94.99376 * 12 2 1 26 26 H 1.08009 * 126.45433 * 359.97085 * 16 15 13 27 27 H 1.08000 * 126.06981 * 180.14097 * 17 16 15 28 28 H 1.08004 * 125.55838 * 179.77448 * 18 17 16 29 29 H 1.09000 * 109.47003 * 270.77726 * 20 19 18 30 30 H 1.08996 * 109.47244 * 30.77586 * 20 19 18 31 31 H 1.08994 * 109.46686 * 150.77629 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8269 -0.4198 -5.2205 11 1 3.8073 -1.1190 -4.0077 12 7 2.0184 -0.6907 1.1962 13 6 2.1471 -0.0184 2.3571 14 8 1.9557 1.1830 2.3890 15 6 2.5179 -0.7347 3.5822 16 6 2.8546 -2.0683 3.6762 17 6 3.1380 -2.3268 5.0209 18 6 2.9641 -1.1743 5.7111 19 7 2.5872 -0.1993 4.8484 20 6 2.3007 1.1927 5.2044 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7083 1.1611 -3.4844 25 1 2.2490 -1.6319 1.1526 26 1 2.8942 -2.7791 2.8639 27 1 3.4376 -3.2776 5.4363 28 1 3.1036 -1.0523 6.7751 29 1 1.2464 1.2921 5.4624 30 1 2.9126 1.4825 6.0586 31 1 2.5300 1.8389 4.3572 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334978651.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:30 Heat of formation + Delta-G solvation = 6.510108 kcal Electronic energy + Delta-G solvation = -14896.250194 eV Core-core repulsion = 12371.471812 eV Total energy + Delta-G solvation = -2524.778383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.03961 -38.28970 -34.82161 -32.91303 -32.12454 -29.80230 -27.96086 -26.29498 -25.24927 -22.70158 -20.66324 -19.88256 -19.06701 -17.76268 -16.17913 -15.32460 -15.26220 -14.99985 -14.27389 -13.80612 -13.35669 -13.15820 -12.89656 -12.40522 -12.19687 -12.09160 -11.77561 -11.65940 -11.08395 -10.94810 -10.74288 -10.32185 -10.22134 -9.15620 -9.04808 -8.54666 -8.54258 -8.12668 -7.77555 -6.11305 -4.20379 1.88229 2.96654 2.98771 3.27668 3.32482 3.34312 4.02262 4.17903 4.42302 4.96729 5.11813 5.21154 5.37088 5.44479 5.60368 5.64990 5.82957 6.26445 6.39625 6.81833 6.95482 6.98365 7.14439 7.21284 7.41637 7.44629 7.58808 7.71465 7.92114 8.14764 8.66548 8.78408 9.10172 9.46858 10.94864 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.047848 B = 0.006644 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.050575 B = 4213.047236 C = 4590.786122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.693 5.693 13 C 0.573 3.427 14 O -0.566 6.566 15 C -0.035 4.035 16 C -0.152 4.152 17 C -0.209 4.209 18 C -0.003 4.003 19 N -0.413 5.413 20 C 0.065 3.935 21 H 0.028 0.972 22 H 0.013 0.987 23 H 0.092 0.908 24 H 0.265 0.735 25 H 0.392 0.608 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.163 0.837 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 -4.123 13.152 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.340 5.340 13 C 0.358 3.642 14 O -0.447 6.447 15 C -0.149 4.149 16 C -0.178 4.178 17 C -0.234 4.234 18 C -0.138 4.138 19 N -0.086 5.086 20 C -0.076 4.076 21 H 0.047 0.953 22 H 0.032 0.968 23 H 0.110 0.890 24 H 0.075 0.925 25 H 0.225 0.775 26 H 0.161 0.839 27 H 0.156 0.844 28 H 0.180 0.820 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.352 -2.744 13.051 13.542 hybrid contribution 0.389 -0.958 -0.723 1.262 sum 2.741 -3.702 12.327 13.160 Atomic orbital electron populations 1.22095 0.98334 0.99285 1.00849 1.18795 0.90994 0.94161 0.79677 0.93100 1.21182 1.32523 1.13284 0.90244 0.91991 1.24884 0.94790 0.94953 0.99053 1.69892 1.35843 1.22465 1.24006 0.86483 0.79190 0.79591 0.81695 1.20111 1.21136 1.20147 1.46261 1.64265 1.13754 1.09757 1.17061 0.77965 0.86457 0.82669 1.90705 1.53556 1.14241 1.86233 1.20574 1.14185 0.93989 0.86187 1.21360 1.05247 0.93723 0.97493 1.20752 1.10741 0.98051 0.93816 1.21899 1.07512 0.88494 0.95865 1.43862 1.49271 1.09384 1.06118 1.22274 1.01912 0.79937 1.03496 0.95290 0.96810 0.88996 0.92511 0.77511 0.83936 0.84427 0.81956 0.90948 0.90442 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.27 6.88 2.61 -69.08 -0.18 6.70 16 3 H 0.05 1.51 7.50 -51.93 -0.39 1.12 16 4 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.03 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.69 -15.23 5.05 -56.24 -0.28 -15.51 16 13 C 0.57 12.36 7.74 -12.86 -0.10 12.26 16 14 O -0.57 -13.74 14.26 5.19 0.07 -13.67 16 15 C -0.04 -0.63 6.89 -81.98 -0.56 -1.19 16 16 C -0.15 -2.35 10.36 -39.12 -0.41 -2.76 16 17 C -0.21 -2.76 10.81 -39.98 -0.43 -3.19 16 18 C 0.00 -0.04 11.38 -16.91 -0.19 -0.23 16 19 N -0.41 -6.33 3.16 -120.24 -0.38 -6.71 16 20 C 0.06 0.84 10.66 59.85 0.64 1.48 16 21 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 25 H 0.39 7.56 7.44 -40.82 -0.30 7.26 16 26 H 0.14 1.96 7.45 -52.48 -0.39 1.56 16 27 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.11 1.69 6.18 -51.93 -0.32 1.37 16 LS Contribution 267.75 15.07 4.03 4.03 Total: -1.00 -31.19 267.75 -6.03 -37.22 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -3.80 Total: 6.53 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.29 Total: -3.22 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.04 Total: -46.63 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.07 Total: -13.67 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.19 -6.03 -37.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334978651.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.733 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds