Wall clock time and date at job start Sun Mar 29 2020 21:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34655 * 125.80255 * 2 1 4 4 H 0.97002 * 124.85281 * 0.02562 * 3 2 1 5 5 C 1.36451 * 110.29569 * 180.29917 * 3 2 1 6 6 C 1.34486 * 108.85776 * 359.72820 * 5 3 2 7 7 C 1.36774 * 125.79796 * 179.82648 * 2 1 3 8 8 C 1.47256 * 126.94397 * 359.97438 * 7 2 1 9 9 O 1.21625 * 120.00220 * 359.71117 * 8 7 2 10 10 N 1.34781 * 119.99929 * 179.70669 * 8 7 2 11 11 C 1.46500 * 119.99732 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47381 * 35.00069 * 11 10 8 13 13 C 1.53006 * 109.47249 * 274.99921 * 11 10 8 14 14 C 1.50699 * 109.46939 * 155.00269 * 11 10 8 15 15 H 1.08003 * 120.00271 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00161 * 179.97438 * 14 11 10 17 17 N 1.31509 * 119.99895 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00268 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46959 * 90.00076 * 18 16 14 20 20 H 1.48491 * 109.47193 * 210.00468 * 18 16 14 21 21 H 1.48498 * 109.46715 * 330.00553 * 18 16 14 22 22 H 1.08994 * 109.47095 * 270.16716 * 1 2 3 23 23 H 1.08995 * 109.46543 * 30.17146 * 1 2 3 24 24 H 1.08999 * 109.46733 * 150.16885 * 1 2 3 25 25 H 1.07998 * 125.56614 * 179.74547 * 5 3 2 26 26 H 1.07995 * 126.83270 * 179.97438 * 6 5 3 27 27 H 0.96998 * 119.99903 * 0.02562 * 10 8 7 28 28 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 29 29 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 31 31 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0074 0.0004 5 6 3.6096 0.7273 -0.0067 6 6 3.6882 -0.6153 -0.0051 7 6 2.3071 -1.1094 0.0034 8 6 1.8702 -2.5156 0.0081 9 8 0.6839 -2.7839 0.0148 10 7 2.7850 -3.5055 0.0051 11 6 2.3503 -4.9045 0.0093 12 1 1.4357 -5.0026 -0.5755 13 6 2.0860 -5.3522 1.4483 14 6 3.4280 -5.7671 -0.5952 15 1 4.3449 -5.3181 -0.9476 16 6 3.2436 -7.1296 -0.6983 17 7 2.1270 -7.6763 -0.2696 18 14 4.5792 -8.1989 -1.4482 19 1 5.5053 -8.6554 -0.3808 20 1 3.9593 -9.3783 -2.1036 21 1 5.3349 -7.4126 -2.4561 22 1 -0.3633 0.0030 1.0276 23 1 -0.3632 0.8884 -0.5165 24 1 -0.3633 -0.8915 -0.5112 25 1 4.4498 1.4059 -0.0121 26 1 4.5890 -1.2110 -0.0095 27 1 3.7310 -3.2915 0.0001 28 1 1.3065 -4.7282 1.8856 29 1 1.7630 -6.3931 1.4514 30 1 3.0006 -5.2541 2.0331 31 1 1.9971 -8.6349 -0.3424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336109065.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:08 Heat of formation + Delta-G solvation = -4.506759 kcal Electronic energy + Delta-G solvation = -14829.356152 eV Core-core repulsion = 12304.100042 eV Total energy + Delta-G solvation = -2525.256110 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95196 -38.14208 -34.61104 -32.32294 -31.28136 -30.84109 -28.57715 -26.05920 -25.14425 -22.57991 -20.66201 -19.90801 -18.81947 -17.48899 -16.42919 -15.07900 -15.00813 -14.70768 -14.15799 -13.54413 -13.33727 -12.95264 -12.70419 -12.46695 -12.35515 -12.25208 -11.56049 -11.30655 -11.01157 -10.85855 -10.60681 -10.22098 -10.13705 -8.92680 -8.85693 -8.61107 -8.44898 -8.01390 -7.62347 -6.03273 -4.11636 2.17003 2.66880 3.30216 3.30790 3.36695 3.39670 4.32665 4.36918 4.62777 5.03535 5.15910 5.28854 5.37591 5.63008 5.79291 5.85941 6.09753 6.22425 6.47281 6.94602 6.99377 7.11338 7.14573 7.28955 7.59256 7.63421 7.73584 7.84945 8.06116 8.26787 8.86258 8.95262 9.37519 9.57573 11.02830 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.045714 B = 0.006626 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.350489 B = 4224.982286 C = 4621.820977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.089 3.911 3 N -0.558 5.558 4 H 0.411 0.589 5 C -0.027 4.027 6 C -0.167 4.167 7 C -0.220 4.220 8 C 0.574 3.426 9 O -0.566 6.566 10 N -0.704 5.704 11 C 0.265 3.735 12 H 0.048 0.952 13 C -0.146 4.146 14 C -0.530 4.530 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.103 0.897 25 H 0.165 0.835 26 H 0.144 0.856 27 H 0.388 0.612 28 H 0.015 0.985 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 15.884 0.935 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.027 4.027 3 N -0.155 5.155 4 H 0.247 0.753 5 C -0.154 4.154 6 C -0.192 4.192 7 C -0.230 4.230 8 C 0.361 3.639 9 O -0.448 6.448 10 N -0.351 5.351 11 C 0.163 3.837 12 H 0.066 0.934 13 C -0.205 4.205 14 C -0.569 4.569 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.523 5.523 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.122 0.878 25 H 0.182 0.818 26 H 0.162 0.838 27 H 0.220 0.780 28 H 0.034 0.966 29 H 0.107 0.893 30 H 0.044 0.956 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.107 15.572 0.951 15.641 hybrid contribution 1.268 -0.053 -0.344 1.315 sum 2.375 15.520 0.606 15.712 Atomic orbital electron populations 1.20528 0.87225 1.03926 1.03166 1.20331 0.93662 0.85660 1.03083 1.41530 1.06224 1.08107 1.59592 0.75338 1.21619 0.85566 0.96394 1.11852 1.22105 0.96248 0.93534 1.07273 1.20563 0.92902 0.93147 1.16406 1.17362 0.85926 0.83853 0.76720 1.90667 1.16815 1.84483 1.52836 1.46297 1.08543 1.07899 1.72325 1.18704 0.96503 0.74676 0.93825 0.93398 1.22071 0.97680 1.03220 0.97513 1.21257 1.02643 0.92133 1.40858 0.92128 1.24887 0.95794 0.97806 0.95291 1.69911 1.24605 1.11631 1.46110 0.86462 0.81540 0.79899 0.79273 1.20602 1.21130 1.19885 0.90811 0.92450 0.87811 0.81773 0.83815 0.78009 0.96625 0.89282 0.95589 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.88 36.01 0.36 -0.86 16 2 C 0.09 1.33 7.17 -81.88 -0.59 0.75 16 3 N -0.56 -6.21 5.90 -9.10 -0.05 -6.27 16 4 H 0.41 2.97 8.96 -40.82 -0.37 2.60 16 5 C -0.03 -0.31 11.89 -16.82 -0.20 -0.51 16 6 C -0.17 -2.44 10.56 -37.50 -0.40 -2.84 16 7 C -0.22 -3.96 6.29 -103.35 -0.65 -4.61 16 8 C 0.57 12.83 7.77 -12.59 -0.10 12.74 16 9 O -0.57 -14.26 14.48 5.26 0.08 -14.19 16 10 N -0.70 -16.09 5.07 -56.06 -0.28 -16.37 16 11 C 0.26 7.11 2.56 -69.08 -0.18 6.93 16 12 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 13 C -0.15 -3.82 9.26 37.16 0.34 -3.48 16 14 C -0.53 -14.62 8.73 -34.44 -0.30 -14.92 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.88 -25.60 11.32 55.43 0.63 -24.97 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.10 1.69 6.47 -51.93 -0.34 1.36 16 25 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 26 H 0.14 1.89 7.69 -52.49 -0.40 1.49 16 27 H 0.39 7.86 7.66 -40.82 -0.31 7.54 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 268.15 15.07 4.04 4.04 Total: -1.00 -32.88 268.15 -6.20 -39.08 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -3.78 Total: 7.66 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.80 Total: -5.10 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.29 Total: -47.61 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.08 Total: -14.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.88 -6.20 -39.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336109065.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.570 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds