Wall clock time and date at job start Sun Mar 29 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47121 * 2 1 4 4 H 1.08996 * 109.46942 * 175.07287 * 3 2 1 5 5 C 1.50697 * 109.47084 * 55.06825 * 3 2 1 6 6 H 1.08005 * 119.99816 * 245.69891 * 5 3 2 7 7 C 1.37876 * 120.00014 * 65.69753 * 5 3 2 8 8 N 1.31513 * 119.99934 * 5.49592 * 7 5 3 9 9 Si 1.86804 * 119.99677 * 185.49626 * 7 5 3 10 10 H 1.48497 * 109.47068 * 269.99913 * 9 7 5 11 11 H 1.48500 * 109.47181 * 30.00569 * 9 7 5 12 12 H 1.48504 * 109.46611 * 150.00170 * 9 7 5 13 13 N 1.46906 * 109.47000 * 295.06668 * 3 2 1 14 14 C 1.46900 * 111.00026 * 279.82940 * 13 3 2 15 15 C 1.53000 * 109.46967 * 185.02710 * 14 13 3 16 16 C 1.47204 * 112.84831 * 48.80363 * 15 14 13 17 17 N 5.98411 * 93.82334 * 328.29488 * 2 1 3 18 18 C 1.53776 * 113.61374 * 277.49810 * 15 14 13 19 19 C 1.53788 * 87.07861 * 220.01994 * 18 15 14 20 20 C 1.53775 * 113.61294 * 179.97438 * 15 14 13 21 21 H 1.09005 * 109.47249 * 65.00744 * 1 2 3 22 22 H 1.08996 * 109.47027 * 185.01027 * 1 2 3 23 23 H 1.09001 * 109.47089 * 305.01149 * 1 2 3 24 24 H 1.09002 * 109.47373 * 240.00141 * 2 1 3 25 25 H 1.09002 * 109.47380 * 119.99844 * 2 1 3 26 26 H 0.96998 * 119.99826 * 355.15269 * 8 7 5 27 27 H 1.00904 * 110.99772 * 43.78554 * 13 3 2 28 28 H 1.09004 * 109.47070 * 305.02962 * 14 13 3 29 29 H 1.08996 * 109.46921 * 65.02601 * 14 13 3 30 30 H 1.08998 * 113.61646 * 334.56451 * 18 15 14 31 31 H 1.09003 * 113.61449 * 105.47469 * 18 15 14 32 32 H 1.08998 * 113.61302 * 270.88067 * 19 18 15 33 33 H 1.08999 * 113.61247 * 139.98342 * 19 18 15 34 34 H 1.08996 * 113.61700 * 254.53195 * 20 15 14 35 35 H 1.09005 * 113.61657 * 25.43536 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0883 5 6 1.4404 2.1873 1.1648 6 1 0.7569 3.0048 0.9889 7 6 1.7644 1.8251 2.4551 8 7 2.6774 0.9032 2.6696 9 14 0.9065 2.6439 3.8984 10 1 1.6704 3.8491 4.3094 11 1 -0.4670 3.0412 3.4972 12 1 0.8341 1.6919 5.0359 13 7 1.6500 2.0998 -1.2546 14 6 2.5595 1.7302 -2.3474 15 6 2.1992 2.5277 -3.6024 16 6 2.0467 3.9681 -3.3402 17 7 1.9290 5.0797 -3.1379 18 6 1.0378 1.9196 -4.4063 19 6 1.8264 2.2879 -5.6742 20 6 3.0971 2.2136 -4.8107 21 1 -0.3634 0.4342 -0.9315 22 1 -0.3633 -1.0237 0.0897 23 1 -0.3633 0.5896 0.8417 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.0722 0.4282 1.9217 27 1 0.6930 1.8859 -1.4926 28 1 3.5860 1.9538 -2.0570 29 1 2.4644 0.6643 -2.5544 30 1 0.9215 0.8456 -4.2612 31 1 0.1006 2.4661 -4.3009 32 1 1.6103 3.2890 -6.0474 33 1 1.7820 1.5262 -6.4527 34 1 3.8218 2.9972 -5.0316 35 1 3.5440 1.2199 -4.7761 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594008300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:29 Heat of formation + Delta-G solvation = 35.124279 kcal Electronic energy + Delta-G solvation = -15363.075820 eV Core-core repulsion = 12975.371336 eV Total energy + Delta-G solvation = -2387.704485 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79395 -36.57254 -35.37306 -32.70796 -30.76472 -27.84550 -25.92022 -25.24887 -23.58954 -22.68550 -20.99352 -19.52808 -17.03517 -16.47501 -15.38169 -14.78381 -14.41889 -14.19619 -13.70355 -13.41390 -13.19912 -12.75138 -12.62412 -12.55637 -12.07688 -11.88711 -11.86641 -11.32288 -11.14956 -10.90258 -10.74448 -10.47353 -10.33367 -10.12810 -10.08039 -9.98742 -9.85590 -8.63699 -8.22399 -7.38298 -6.29014 -3.98603 3.04977 3.19044 3.47385 3.49563 3.65541 4.05872 4.43217 4.50096 4.56864 4.76100 4.95392 5.21696 5.40721 5.54392 5.59070 5.61786 5.73969 5.79528 5.90418 6.02721 6.06632 6.10379 6.15708 6.20891 6.30920 6.64137 6.95225 7.02125 7.21476 7.29914 7.87016 7.99555 8.25350 8.42070 8.65217 8.94173 9.69428 11.07481 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.036608 B = 0.007355 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.671008 B = 3805.790696 C = 4141.634479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.152 4.152 3 C 0.205 3.795 4 H 0.027 0.973 5 C -0.570 4.570 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.075 3.925 15 C 0.008 3.992 16 C 0.252 3.748 17 N -0.439 5.439 18 C -0.122 4.122 19 C -0.143 4.143 20 C -0.119 4.119 21 H 0.032 0.968 22 H 0.028 0.972 23 H 0.072 0.928 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.269 0.731 27 H 0.330 0.670 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -2.862 -14.223 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.097 3.903 4 H 0.045 0.955 5 C -0.609 4.609 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.212 1.212 13 N -0.308 5.308 14 C -0.056 4.056 15 C 0.004 3.996 16 C -0.066 4.066 17 N -0.114 5.114 18 C -0.161 4.161 19 C -0.181 4.181 20 C -0.159 4.159 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.091 0.909 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.453 -0.488 -12.091 12.188 hybrid contribution -0.159 -1.466 -1.793 2.321 sum -1.612 -1.954 -13.884 14.113 Atomic orbital electron populations 1.21595 0.96765 0.99113 1.01435 1.22262 0.96182 1.01319 0.99477 1.19338 0.95651 0.88379 0.86965 0.95495 1.21833 1.30004 1.17989 0.91078 0.92752 1.25688 0.95800 0.97059 0.99991 1.70785 1.24645 1.24564 1.35577 0.83553 0.75601 0.75720 0.75433 1.21598 1.21502 1.21184 1.60742 1.05001 1.62492 1.02565 1.21900 0.98791 0.95321 0.89618 1.19264 0.99717 0.84028 0.96561 1.27862 0.93140 0.93465 0.92158 1.81126 1.08293 1.13032 1.08944 1.23033 0.96913 1.01626 0.94489 1.22908 0.96171 1.02112 0.96859 1.22995 0.96651 1.03064 0.93146 0.94866 0.95327 0.90892 0.95943 0.91476 0.91933 0.85177 0.90875 0.94221 0.88403 0.90689 0.90203 0.90669 0.90766 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.38 37.16 0.35 -2.27 16 2 C -0.15 -3.29 5.45 -26.73 -0.15 -3.44 16 3 C 0.20 4.87 1.95 -68.86 -0.13 4.74 16 4 H 0.03 0.71 7.32 -51.93 -0.38 0.33 16 5 C -0.57 -15.60 7.18 -34.44 -0.25 -15.84 16 6 H 0.05 1.55 7.82 -52.48 -0.41 1.14 16 7 C 0.02 0.50 5.29 -17.82 -0.09 0.41 16 8 N -0.92 -26.96 13.21 55.43 0.73 -26.23 16 9 Si 1.07 25.44 29.91 -169.99 -5.08 20.35 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.68 -13.68 5.59 -107.95 -0.60 -14.28 16 14 C 0.08 1.19 4.93 -3.82 -0.02 1.17 16 15 C 0.01 0.11 1.07 -156.49 -0.17 -0.06 16 16 C 0.25 4.24 13.60 -20.76 -0.28 3.96 16 17 N -0.44 -8.57 18.54 42.15 0.78 -7.79 16 18 C -0.12 -1.28 7.20 -25.92 -0.19 -1.46 16 19 C -0.14 -1.26 7.79 -25.90 -0.20 -1.46 16 20 C -0.12 -1.16 7.21 -25.90 -0.19 -1.35 16 21 H 0.03 0.58 6.68 -51.93 -0.35 0.23 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.63 6.88 -51.93 -0.36 1.28 16 24 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 25 H 0.07 1.62 6.17 -51.93 -0.32 1.30 16 26 H 0.27 7.77 5.62 -40.82 -0.23 7.54 16 27 H 0.33 6.35 6.79 -39.29 -0.27 6.08 16 28 H 0.07 1.23 7.95 -51.93 -0.41 0.81 16 29 H 0.04 0.57 7.00 -51.93 -0.36 0.20 16 30 H 0.10 0.90 7.96 -51.93 -0.41 0.49 16 31 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.08 0.74 8.13 -51.93 -0.42 0.31 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 285.64 15.07 4.30 4.30 Total: -1.00 -30.76 285.64 -6.38 -37.15 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.19 Total: 2.09 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.32 Total: -15.60 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.91 Total: -48.30 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.76 -6.38 -37.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.271 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds