Wall clock time and date at job start Sun Mar 29 2020 21:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.27576 * 126.41505 * 2 1 4 4 N 1.39145 * 113.16211 * 180.02562 * 3 2 1 5 5 C 1.46509 * 124.43469 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.49680 * 300.02083 * 5 4 3 7 7 C 1.52997 * 117.49724 * 8.64570 * 5 4 3 8 8 C 1.34950 * 111.12717 * 0.26382 * 4 3 2 9 9 O 1.21300 * 127.50156 * 179.71622 * 8 4 3 10 10 C 1.51441 * 126.42072 * 180.02562 * 2 1 3 11 11 H 1.09005 * 110.60193 * 298.62664 * 10 2 1 12 12 C 1.52997 * 110.60695 * 61.43811 * 10 2 1 13 13 C 1.50707 * 109.46725 * 185.00114 * 12 10 2 14 14 H 1.07998 * 120.00312 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99599 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99939 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00328 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47102 * 90.00049 * 17 15 13 19 19 H 1.48504 * 109.47132 * 210.00151 * 17 15 13 20 20 H 1.48500 * 109.46884 * 329.99810 * 17 15 13 21 21 H 1.08996 * 109.47719 * 359.96676 * 1 2 3 22 22 H 1.09000 * 109.47341 * 119.97547 * 1 2 3 23 23 H 1.09010 * 109.46700 * 239.97234 * 1 2 3 24 24 H 1.09002 * 115.55964 * 154.32910 * 5 4 3 25 25 H 1.08990 * 117.49990 * 359.97438 * 6 5 4 26 26 H 1.09004 * 117.49237 * 214.97837 * 6 5 4 27 27 H 1.08999 * 117.49685 * 145.02315 * 7 5 4 28 28 H 1.08997 * 117.50044 * 359.97438 * 7 5 4 29 29 H 1.08992 * 109.47563 * 305.00087 * 12 10 2 30 30 H 1.09000 * 109.47227 * 65.00993 * 12 10 2 31 31 H 0.97000 * 120.00356 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0267 0.0000 4 7 3.6187 0.7077 -0.0006 5 6 4.7021 1.6939 -0.0002 6 6 4.7671 2.6724 -1.1746 7 6 4.3213 3.1615 0.2050 8 6 3.8036 -0.6291 -0.0068 9 8 4.8580 -1.2287 -0.0137 10 6 2.4061 -1.2186 -0.0005 11 1 2.2404 -1.8179 0.8948 12 6 2.1748 -2.0579 -1.2587 13 6 2.9897 -3.3229 -1.1754 14 1 3.6100 -3.5098 -0.3113 15 6 2.9431 -4.2417 -2.2024 16 7 3.6538 -5.3459 -2.1295 17 14 1.8707 -3.9182 -3.6973 18 1 2.6572 -3.1848 -4.7213 19 1 1.4058 -5.2106 -4.2620 20 1 0.6965 -3.1021 -3.2968 21 1 -0.3634 1.0276 0.0006 22 1 -0.3634 -0.5134 -0.8902 23 1 -0.3633 -0.5143 0.8898 24 1 5.6466 1.3548 0.4253 25 1 4.0041 2.5821 -1.9477 26 1 5.7544 2.9770 -1.5217 27 1 5.0154 3.7879 0.7653 28 1 3.2648 3.3933 0.3392 29 1 1.1177 -2.3112 -1.3373 30 1 2.4782 -1.4876 -2.1367 31 1 3.6214 -5.9922 -2.8521 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601943309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:41 Heat of formation + Delta-G solvation = 44.537115 kcal Electronic energy + Delta-G solvation = -15124.369950 eV Core-core repulsion = 12601.240542 eV Total energy + Delta-G solvation = -2523.129408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83150 -36.96842 -36.81452 -33.45805 -32.03773 -30.71917 -28.02931 -26.39351 -22.70426 -22.36397 -21.62763 -20.05713 -18.78675 -17.01297 -16.56074 -15.71437 -14.76755 -14.64717 -14.14068 -13.98342 -13.45002 -13.33096 -12.71492 -12.58728 -12.23857 -12.00269 -11.74849 -11.56153 -11.47444 -11.01989 -10.67466 -10.55679 -10.35473 -10.03533 -9.65038 -9.42855 -8.84663 -8.54363 -8.06447 -6.03312 -4.02501 2.06551 2.68149 3.09113 3.28383 3.35172 3.35981 3.91001 4.34940 4.42155 4.57054 4.83954 5.00159 5.06705 5.27778 5.37537 5.61633 5.63700 5.64876 5.75459 5.85216 5.95181 6.00855 6.15859 6.25383 6.57678 6.81957 6.91529 7.04595 7.65939 8.11481 8.50008 8.50617 9.06152 9.55563 11.10048 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030876 B = 0.008906 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.646006 B = 3143.301626 C = 3484.020567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.095 3.905 3 N -0.253 5.253 4 N -0.459 5.459 5 C 0.100 3.900 6 C -0.189 4.189 7 C -0.171 4.171 8 C 0.511 3.489 9 O -0.474 6.474 10 C -0.122 4.122 11 H 0.128 0.872 12 C 0.019 3.981 13 C -0.518 4.518 14 H 0.082 0.918 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.265 1.265 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.137 0.863 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.037 0.963 30 H 0.013 0.987 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 14.770 3.805 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 N -0.060 5.060 4 N -0.280 5.280 5 C -0.004 4.004 6 C -0.228 4.228 7 C -0.208 4.208 8 C 0.298 3.702 9 O -0.342 6.342 10 C -0.145 4.145 11 H 0.146 0.854 12 C -0.019 4.019 13 C -0.556 4.556 14 H 0.100 0.900 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.701 3.299 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.189 1.189 21 H 0.095 0.905 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.155 0.845 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.055 0.945 30 H 0.031 0.969 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.367 15.301 3.718 16.340 hybrid contribution -0.264 -0.706 -0.944 1.208 sum -4.631 14.595 2.774 15.561 Atomic orbital electron populations 1.20310 0.85277 1.03588 1.04129 1.25459 0.97300 0.91839 0.95188 1.74398 0.89037 1.27046 1.15528 1.49216 1.01851 1.05808 1.71077 1.21492 0.89955 0.85021 1.03887 1.23397 1.03219 1.03660 0.92491 1.23201 1.03296 0.94940 0.99412 1.21357 0.92009 0.81490 0.75295 1.90759 1.31013 1.65569 1.46908 1.21825 0.90902 0.96130 1.05666 0.85427 1.19351 0.98450 0.94886 0.89244 1.21042 1.26599 1.00947 1.07009 0.90033 1.24956 0.95292 0.94947 0.97896 1.69904 1.40730 1.09765 1.33112 0.86886 0.81495 0.77821 0.83729 1.20383 1.21108 1.18925 0.90544 0.89263 0.89481 0.84540 0.88468 0.88068 0.88192 0.87503 0.94514 0.96873 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.47 36.00 0.38 -0.46 16 2 C 0.09 1.53 6.93 -78.72 -0.55 0.99 16 3 N -0.25 -4.31 11.31 35.53 0.40 -3.91 16 4 N -0.46 -8.61 3.87 -53.40 -0.21 -8.82 16 5 C 0.10 1.55 6.71 -67.93 -0.46 1.09 16 6 C -0.19 -2.47 10.46 -26.73 -0.28 -2.75 16 7 C -0.17 -2.04 10.14 -26.73 -0.27 -2.31 16 8 C 0.51 11.37 7.59 -10.43 -0.08 11.30 16 9 O -0.47 -12.34 17.09 5.54 0.09 -12.25 16 10 C -0.12 -2.46 2.97 -92.08 -0.27 -2.73 16 11 H 0.13 2.47 8.14 -51.93 -0.42 2.05 16 12 C 0.02 0.45 3.55 -27.88 -0.10 0.35 16 13 C -0.52 -14.92 8.99 -34.44 -0.31 -15.23 16 14 H 0.08 2.61 7.68 -52.49 -0.40 2.20 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 17 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 23 H 0.09 0.81 8.14 -51.92 -0.42 0.38 16 24 H 0.14 2.02 8.14 -51.93 -0.42 1.60 16 25 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.11 1.34 7.74 -51.93 -0.40 0.94 16 29 H 0.04 0.80 7.07 -51.93 -0.37 0.43 16 30 H 0.01 0.32 7.54 -51.93 -0.39 -0.07 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 271.09 15.07 4.09 4.09 Total: -1.00 -34.20 271.09 -5.66 -39.86 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.11 Total: -0.70 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.03 Total: -7.78 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.97 Total: -40.03 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.20 -5.66 -39.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601943309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.399 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds