Wall clock time and date at job start Sun Mar 29 2020 21:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.27576 * 126.41505 * 2 1 4 4 N 1.39145 * 113.16211 * 180.02562 * 3 2 1 5 5 C 1.46509 * 124.43469 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.49680 * 300.02083 * 5 4 3 7 7 C 1.52997 * 117.49724 * 8.64570 * 5 4 3 8 8 C 1.34950 * 111.12717 * 0.26382 * 4 3 2 9 9 O 1.21300 * 127.50156 * 179.71622 * 8 4 3 10 10 C 1.51441 * 126.42072 * 180.02562 * 2 1 3 11 11 H 1.09005 * 110.60193 * 298.62664 * 10 2 1 12 12 C 1.52997 * 110.60695 * 61.43811 * 10 2 1 13 13 C 1.50707 * 109.46725 * 185.00114 * 12 10 2 14 14 H 1.07998 * 120.00312 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99599 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99939 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00328 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47102 * 90.00049 * 17 15 13 19 19 H 1.48504 * 109.47132 * 210.00151 * 17 15 13 20 20 H 1.48500 * 109.46884 * 329.99810 * 17 15 13 21 21 H 1.08996 * 109.47719 * 359.96676 * 1 2 3 22 22 H 1.09000 * 109.47341 * 119.97547 * 1 2 3 23 23 H 1.09010 * 109.46700 * 239.97234 * 1 2 3 24 24 H 1.09002 * 115.55964 * 154.32910 * 5 4 3 25 25 H 1.08990 * 117.49990 * 359.97438 * 6 5 4 26 26 H 1.09004 * 117.49237 * 214.97837 * 6 5 4 27 27 H 1.08999 * 117.49685 * 145.02315 * 7 5 4 28 28 H 1.08997 * 117.50044 * 359.97438 * 7 5 4 29 29 H 1.08992 * 109.47563 * 305.00087 * 12 10 2 30 30 H 1.09000 * 109.47227 * 65.00993 * 12 10 2 31 31 H 0.97000 * 120.00356 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0267 0.0000 4 7 3.6187 0.7077 -0.0006 5 6 4.7021 1.6939 -0.0002 6 6 4.7671 2.6724 -1.1746 7 6 4.3213 3.1615 0.2050 8 6 3.8036 -0.6291 -0.0068 9 8 4.8580 -1.2287 -0.0137 10 6 2.4061 -1.2186 -0.0005 11 1 2.2404 -1.8179 0.8948 12 6 2.1748 -2.0579 -1.2587 13 6 2.9897 -3.3229 -1.1754 14 1 3.6100 -3.5098 -0.3113 15 6 2.9431 -4.2417 -2.2024 16 7 3.6538 -5.3459 -2.1295 17 14 1.8707 -3.9182 -3.6973 18 1 2.6572 -3.1848 -4.7213 19 1 1.4058 -5.2106 -4.2620 20 1 0.6965 -3.1021 -3.2968 21 1 -0.3634 1.0276 0.0006 22 1 -0.3634 -0.5134 -0.8902 23 1 -0.3633 -0.5143 0.8898 24 1 5.6466 1.3548 0.4253 25 1 4.0041 2.5821 -1.9477 26 1 5.7544 2.9770 -1.5217 27 1 5.0154 3.7879 0.7653 28 1 3.2648 3.3933 0.3392 29 1 1.1177 -2.3112 -1.3373 30 1 2.4782 -1.4876 -2.1367 31 1 3.6214 -5.9922 -2.8521 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601943309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:41 Heat of formation + Delta-G solvation = 20.347381 kcal Electronic energy + Delta-G solvation = -15125.418895 eV Core-core repulsion = 12601.240542 eV Total energy + Delta-G solvation = -2524.178353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.33495 -38.55450 -38.09008 -35.43080 -33.61142 -32.44997 -29.16191 -28.26444 -24.44039 -23.37016 -23.03862 -21.68701 -20.29762 -18.85816 -18.15474 -17.30272 -16.41378 -16.18707 -15.81454 -15.51861 -14.77093 -14.62296 -14.45982 -13.90774 -13.79319 -13.41729 -13.16014 -13.05583 -12.79920 -12.46866 -12.43668 -11.88579 -11.72419 -11.64486 -11.48518 -11.35931 -10.80813 -10.51047 -9.46653 -8.28195 -6.34183 0.63996 1.31486 1.35026 1.37502 1.48267 1.54449 2.34936 2.74600 3.00651 3.08547 3.20677 3.64119 3.85445 3.98446 4.08863 4.19000 4.44445 4.57330 4.68614 4.79461 4.89768 4.94297 5.00700 5.13529 5.15873 5.19229 5.34096 5.48951 5.62352 6.24607 6.66969 6.73455 6.89589 7.27908 8.89459 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.030876 B = 0.008906 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.646006 B = 3143.301626 C = 3484.020567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.118 3.882 3 N -0.257 5.257 4 N -0.456 5.456 5 C 0.051 3.949 6 C -0.181 4.181 7 C -0.135 4.135 8 C 0.492 3.508 9 O -0.534 6.534 10 C -0.130 4.130 11 H 0.130 0.870 12 C 0.028 3.972 13 C -0.527 4.527 14 H 0.027 0.973 15 C 0.002 3.998 16 N -0.952 5.952 17 Si 0.949 3.051 18 H -0.280 1.280 19 H -0.280 1.280 20 H -0.222 1.222 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.131 0.869 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.132 0.868 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.006 0.994 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 17.469 3.049 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 N -0.063 5.063 4 N -0.274 5.274 5 C -0.051 4.051 6 C -0.220 4.220 7 C -0.173 4.173 8 C 0.281 3.719 9 O -0.408 6.408 10 C -0.154 4.154 11 H 0.147 0.853 12 C -0.011 4.011 13 C -0.565 4.565 14 H 0.045 0.955 15 C -0.195 4.195 16 N -0.593 5.593 17 Si 0.771 3.229 18 H -0.206 1.206 19 H -0.205 1.205 20 H -0.145 1.145 21 H 0.120 0.880 22 H 0.119 0.881 23 H 0.130 0.870 24 H 0.149 0.851 25 H 0.104 0.896 26 H 0.141 0.859 27 H 0.150 0.850 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.025 0.975 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.315 18.074 2.987 19.726 hybrid contribution 0.703 -1.533 -0.612 1.794 sum -6.612 16.541 2.375 17.971 Atomic orbital electron populations 1.20631 0.81005 1.05892 1.05799 1.26100 0.99137 0.88889 0.93295 1.74492 0.87959 1.26833 1.17003 1.49330 1.03323 1.05161 1.69578 1.21873 0.89557 0.86327 1.07345 1.23455 1.04187 1.01967 0.92348 1.23298 1.03972 0.91755 0.98268 1.21770 0.92090 0.83042 0.75010 1.90708 1.32963 1.67116 1.50026 1.21791 0.91367 0.97760 1.04441 0.85272 1.19200 0.98912 0.92542 0.90418 1.21294 1.26405 1.03437 1.05369 0.95467 1.26061 0.97099 0.94393 1.01907 1.70092 1.43184 1.11327 1.34676 0.85699 0.80457 0.78462 0.78300 1.20621 1.20500 1.14451 0.87986 0.88091 0.86988 0.85107 0.89617 0.85875 0.84997 0.87588 0.91290 0.97542 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.47 71.23 0.75 -0.57 16 2 C 0.12 3.49 6.93 46.83 0.32 3.81 16 3 N -0.26 -8.17 11.31 -40.85 -0.46 -8.64 16 4 N -0.46 -17.02 3.87 -441.15 -1.71 -18.72 16 5 C 0.05 1.57 6.71 44.99 0.30 1.87 16 6 C -0.18 -4.40 10.46 30.60 0.32 -4.08 16 7 C -0.14 -2.86 10.14 30.60 0.31 -2.55 16 8 C 0.49 22.70 7.59 87.94 0.67 23.37 16 9 O -0.53 -29.82 17.09 -3.09 -0.05 -29.87 16 10 C -0.13 -5.22 2.97 -11.74 -0.03 -5.25 16 11 H 0.13 5.08 8.14 -2.38 -0.02 5.06 16 12 C 0.03 1.27 3.55 29.85 0.11 1.38 16 13 C -0.53 -31.39 8.99 25.60 0.23 -31.16 16 14 H 0.03 1.86 7.68 -2.91 -0.02 1.84 16 15 C 0.00 0.11 5.47 84.65 0.46 0.57 16 16 N -0.95 -61.99 13.96 21.45 0.30 -61.69 16 17 Si 0.95 43.69 27.47 68.60 1.88 45.57 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.22 -8.66 6.54 99.48 0.65 -8.01 16 21 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.10 1.64 8.04 -2.39 -0.02 1.62 16 23 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 25 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.11 2.31 7.74 -2.39 -0.02 2.29 16 29 H 0.07 2.74 7.07 -2.39 -0.02 2.72 16 30 H 0.01 0.30 7.54 -2.39 -0.02 0.28 16 31 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -80.00 271.09 4.46 -75.54 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.06 Total: 10.43 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 3.43 Total: -12.62 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -1.87 Total: -89.05 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal Total: -80.00 4.46 -75.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601943309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.886 kcal (2) G-P(sol) polarization free energy of solvation -79.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds