Wall clock time and date at job start Sun Mar 29 2020 22:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47401 * 2 1 4 4 C 1.53007 * 109.47312 * 119.99923 * 2 1 3 5 5 C 1.53003 * 109.46889 * 295.00072 * 4 2 1 6 6 C 1.47198 * 109.47018 * 179.97438 * 5 4 2 7 7 N 4.86675 * 101.55212 * 104.08555 * 2 1 3 8 8 C 1.52999 * 109.47360 * 240.00255 * 2 1 3 9 9 N 1.46493 * 109.47253 * 64.99563 * 8 2 1 10 10 C 1.36943 * 119.99675 * 90.00750 * 9 8 2 11 11 H 1.08002 * 119.99283 * 214.58549 * 10 9 8 12 12 C 1.38806 * 120.00484 * 34.57855 * 10 9 8 13 13 N 1.31624 * 119.99900 * 23.54741 * 12 10 9 14 14 Si 1.86796 * 120.00286 * 203.54556 * 12 10 9 15 15 H 1.48495 * 109.47149 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47011 * 120.00224 * 14 12 10 17 17 H 1.48497 * 109.47047 * 240.00171 * 14 12 10 18 18 C 1.46501 * 120.00098 * 270.00127 * 9 8 2 19 19 C 1.52997 * 117.49714 * 194.24302 * 18 9 8 20 20 C 1.52996 * 60.00340 * 252.51279 * 19 18 9 21 21 H 1.09005 * 109.47075 * 300.00155 * 1 2 3 22 22 H 1.08998 * 109.47004 * 60.00059 * 1 2 3 23 23 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46630 * 54.99808 * 4 2 1 25 25 H 1.08997 * 109.47304 * 175.00516 * 4 2 1 26 26 H 1.08997 * 109.47365 * 299.99893 * 5 4 2 27 27 H 1.09006 * 109.46706 * 59.99899 * 5 4 2 28 28 H 1.09003 * 109.46537 * 304.99357 * 8 2 1 29 29 H 1.08999 * 109.47384 * 185.00082 * 8 2 1 30 30 H 0.96993 * 120.00046 * 174.92321 * 13 12 10 31 31 H 1.08991 * 115.55284 * 339.95191 * 18 9 8 32 32 H 1.09007 * 117.49994 * 359.97438 * 19 18 9 33 33 H 1.08998 * 117.50375 * 145.02475 * 19 18 9 34 34 H 1.09004 * 117.50112 * 252.51730 * 20 19 18 35 35 H 1.09000 * 117.51850 * 107.47630 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 0.0690 2.4954 6 6 2.1254 -0.6252 3.6973 7 7 2.5046 -1.1604 4.6248 8 6 2.0400 -0.7212 -1.2492 9 7 1.6524 0.0354 -2.4423 10 6 2.4847 1.0021 -2.9403 11 1 2.0700 1.8911 -3.3922 12 6 3.8611 0.8397 -2.8642 13 7 4.3767 -0.3671 -2.7617 14 14 4.9818 2.3335 -2.9072 15 1 4.1607 3.5651 -3.0252 16 1 5.7803 2.3895 -1.6563 17 1 5.8954 2.2334 -4.0735 18 6 0.3746 -0.2424 -3.1027 19 6 0.1683 0.3242 -4.5089 20 6 -0.5783 0.9346 -3.3212 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6054 -1.7198 1.2952 25 1 3.1263 -0.7994 1.2057 26 1 2.0698 1.0675 2.4494 27 1 0.5489 0.1471 2.5389 28 1 1.6055 -1.7198 -1.2951 29 1 3.1263 -0.7994 -1.2056 30 1 5.3390 -0.4867 -2.7826 31 1 -0.0678 -1.2136 -2.8813 32 1 0.9832 0.9040 -4.9425 33 1 -0.4098 -0.2743 -5.2129 34 1 -1.6475 0.7376 -3.2436 35 1 -0.2545 1.9155 -2.9730 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602449736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:38 Heat of formation + Delta-G solvation = 40.770523 kcal Electronic energy + Delta-G solvation = -15312.291280 eV Core-core repulsion = 12924.831635 eV Total energy + Delta-G solvation = -2387.459645 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.22255 -38.01002 -36.58921 -34.89001 -32.53014 -30.61956 -27.35407 -26.33077 -24.30531 -22.87057 -21.55408 -20.63679 -18.53579 -17.89105 -17.21439 -16.32226 -16.12235 -15.62308 -15.16958 -14.73139 -14.54331 -14.29393 -13.61922 -13.41122 -13.25373 -13.14521 -12.79426 -12.63376 -12.48377 -12.33342 -12.10920 -11.95273 -11.69270 -11.60137 -11.38005 -11.12846 -11.00301 -10.80185 -10.30966 -8.34518 -7.75073 -5.31249 1.45691 1.51385 1.59347 1.81439 1.86135 2.52898 3.13680 3.21429 3.55234 3.63649 4.21797 4.23470 4.39422 4.49021 4.56922 4.63297 4.70453 4.79211 4.93798 5.03302 5.03819 5.14451 5.17469 5.25636 5.35951 5.44195 5.56876 5.63053 5.73321 5.77542 5.88666 6.00380 6.54768 6.65148 7.24725 7.98341 8.46149 9.18962 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.009392 C = 0.007096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.241113 B = 2980.454757 C = 3944.798193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.055 0.945 4 C -0.101 4.101 5 C -0.020 4.020 6 C 0.239 3.761 7 N -0.509 5.509 8 C 0.149 3.851 9 N -0.563 5.563 10 C -0.249 4.249 11 H 0.054 0.946 12 C -0.033 4.033 13 N -0.918 5.918 14 Si 0.948 3.052 15 H -0.269 1.269 16 H -0.288 1.288 17 H -0.297 1.297 18 C 0.112 3.888 19 C -0.209 4.209 20 C -0.197 4.197 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.125 0.875 27 H 0.139 0.861 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.250 0.750 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.182 2.030 4.653 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.073 0.927 4 C -0.141 4.141 5 C -0.059 4.059 6 C -0.077 4.077 7 N -0.187 5.187 8 C 0.023 3.977 9 N -0.280 5.280 10 C -0.380 4.380 11 H 0.071 0.929 12 C -0.231 4.231 13 N -0.562 5.562 14 Si 0.777 3.223 15 H -0.194 1.194 16 H -0.215 1.215 17 H -0.224 1.224 18 C 0.003 3.997 19 C -0.248 4.248 20 C -0.238 4.238 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.143 0.857 27 H 0.157 0.843 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.416 1.169 6.133 10.479 hybrid contribution 1.016 0.784 -0.782 1.503 sum -7.400 1.953 5.351 9.339 Atomic orbital electron populations 1.21863 0.94220 1.01421 1.02218 1.21495 0.96879 0.99460 0.93815 0.92655 1.21433 1.00708 0.99457 0.92468 1.19618 1.04324 0.98679 0.83298 1.29906 0.91522 0.92237 0.94023 1.81206 1.11652 1.11756 1.14103 1.20999 1.00709 0.91474 0.84478 1.43594 1.16298 1.41442 1.26673 1.19048 0.86963 0.96793 1.35202 0.92880 1.25648 0.98640 0.97581 1.01185 1.70042 1.10934 1.21305 1.53962 0.85514 0.79119 0.80894 0.76782 1.19394 1.21492 1.22436 1.21302 0.88991 0.94745 0.94619 1.23117 1.03020 1.05981 0.92674 1.23280 0.97852 0.99335 1.03286 0.91048 0.92845 0.93158 0.91052 0.93203 0.85708 0.84299 0.95740 0.91920 0.94012 0.88108 0.91370 0.88551 0.87758 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.52 71.98 0.61 -2.95 16 2 C -0.10 -2.99 2.59 -10.79 -0.03 -3.02 16 3 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.10 -2.56 4.64 30.60 0.14 -2.42 16 5 C -0.02 -0.36 5.46 28.79 0.16 -0.20 16 6 C 0.24 5.86 15.43 89.44 1.38 7.24 16 7 N -0.51 -15.77 18.54 20.01 0.37 -15.40 16 8 C 0.15 6.22 4.81 86.38 0.42 6.64 16 9 N -0.56 -25.48 2.63 -678.06 -1.78 -27.27 16 10 C -0.25 -12.73 8.15 84.03 0.68 -12.04 16 11 H 0.05 2.77 7.08 -2.91 -0.02 2.75 16 12 C -0.03 -1.77 4.93 84.86 0.42 -1.35 16 13 N -0.92 -51.39 11.39 21.65 0.25 -51.15 16 14 Si 0.95 43.00 29.62 68.60 2.03 45.03 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 18 C 0.11 4.32 5.12 44.99 0.23 4.55 16 19 C -0.21 -7.75 9.79 30.59 0.30 -7.45 16 20 C -0.20 -6.55 8.79 30.59 0.27 -6.28 16 21 H 0.07 1.34 6.57 -2.38 -0.02 1.32 16 22 H 0.05 1.56 5.30 -2.39 -0.01 1.55 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.14 1.75 6.57 -2.38 -0.02 1.74 16 28 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 29 H 0.06 3.13 5.38 -2.39 -0.01 3.11 16 30 H 0.25 13.69 8.32 -92.71 -0.77 12.92 16 31 H 0.10 3.55 8.10 -2.39 -0.02 3.53 16 32 H 0.07 2.94 6.89 -2.38 -0.02 2.92 16 33 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 35 H 0.07 2.57 8.01 -2.39 -0.02 2.55 16 Total: -1.00 -61.61 288.98 6.51 -55.10 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.06 Total: 10.97 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.58 Total: -17.29 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -1.17 Total: -93.81 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -61.61 6.51 -55.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.867 kcal (2) G-P(sol) polarization free energy of solvation -61.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds