Wall clock time and date at job start Sun Mar 29 2020 22:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47128 * 2 1 4 4 C 1.52998 * 109.47126 * 240.00387 * 2 1 3 5 5 C 1.50707 * 109.47444 * 64.99658 * 4 2 1 6 6 H 1.07997 * 119.99394 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99932 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00569 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99785 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47224 * 60.00198 * 9 7 5 11 11 H 1.48504 * 109.47216 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47237 * 300.00067 * 9 7 5 13 13 C 1.52992 * 109.47291 * 120.00255 * 2 1 3 14 14 N 1.46903 * 109.47136 * 295.00040 * 13 2 1 15 15 C 1.46901 * 111.00099 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47117 * 180.02562 * 15 14 13 17 17 C 1.47206 * 115.54853 * 325.66515 * 16 15 14 18 18 N 5.33739 * 91.51058 * 58.63356 * 2 1 3 19 19 C 1.53000 * 117.49997 * 179.97438 * 16 15 14 20 20 C 1.53002 * 60.02940 * 252.49592 * 19 16 15 21 21 H 1.09003 * 109.47476 * 60.00069 * 1 2 3 22 22 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47284 * 300.00044 * 1 2 3 24 24 H 1.09004 * 109.47508 * 184.99926 * 4 2 1 25 25 H 1.09006 * 109.47008 * 304.99623 * 4 2 1 26 26 H 0.96994 * 119.99921 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.47215 * 175.00500 * 13 2 1 28 28 H 1.09002 * 109.47447 * 54.99906 * 13 2 1 29 29 H 1.00899 * 110.99889 * 56.04135 * 14 13 2 30 30 H 1.08996 * 109.47252 * 59.99499 * 15 14 13 31 31 H 1.08998 * 109.46758 * 299.99692 * 15 14 13 32 32 H 1.09002 * 117.49833 * 359.97438 * 19 16 15 33 33 H 1.09002 * 117.49953 * 144.99738 * 19 16 15 34 34 H 1.09000 * 117.49996 * 107.50493 * 20 19 16 35 35 H 1.08999 * 117.49664 * 252.51862 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4767 6 1 1.0806 0.9746 -2.3756 7 6 1.9923 -0.4021 -3.7284 8 7 2.6746 -1.5197 -3.8514 9 14 1.4986 0.5630 -5.2497 10 1 2.0918 1.9230 -5.1872 11 1 1.9936 -0.1370 -6.4622 12 1 0.0188 0.6707 -5.3090 13 6 2.0400 -0.7213 1.2491 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6266 3.6671 16 6 1.7024 0.1907 4.8892 17 6 1.6835 1.6506 4.7010 18 7 1.6707 2.7772 4.5558 19 6 2.1040 -0.3391 6.2671 20 6 0.6447 -0.4165 5.8141 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 3.1263 -0.7994 -1.2057 25 1 1.6054 -1.7198 -1.2952 26 1 2.9212 -1.8429 -4.7320 27 1 3.1264 -0.7994 1.2055 28 1 1.6054 -1.7198 1.2951 29 1 0.6528 0.1793 2.4752 30 1 3.2127 -0.7038 3.6399 31 1 1.6921 -1.6246 3.7299 32 1 2.6696 -1.2702 6.3031 33 1 2.3546 0.3933 7.0346 34 1 0.2504 -1.3983 5.5521 35 1 -0.0647 0.2653 6.2832 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602642339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:38 Heat of formation + Delta-G solvation = 33.591544 kcal Electronic energy + Delta-G solvation = -14516.227704 eV Core-core repulsion = 12128.456755 eV Total energy + Delta-G solvation = -2387.770949 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05437 -36.61505 -35.50948 -33.62236 -31.80894 -27.51296 -26.56120 -24.61221 -23.03081 -22.88110 -22.07269 -19.03290 -17.42950 -16.41804 -15.60185 -15.09709 -14.69130 -14.34078 -14.09223 -13.70957 -13.19956 -13.04153 -12.75050 -12.32486 -12.25704 -12.03878 -11.84038 -11.65645 -11.35103 -10.87232 -10.83768 -10.74366 -10.32991 -10.28424 -10.16790 -9.71281 -9.14765 -8.96719 -8.31365 -8.22945 -5.96317 -3.97351 2.50505 2.84821 3.36090 3.40149 3.43202 3.68002 3.70924 4.00504 4.47948 4.50697 4.68964 4.83759 5.22902 5.30287 5.39523 5.43854 5.47588 5.64387 5.68838 5.75368 5.82617 6.05454 6.23642 6.45388 6.55422 6.91396 7.11227 7.17212 7.30327 7.56970 7.67155 7.70661 7.86569 8.03808 8.47898 9.08667 9.66061 11.15188 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.052575 B = 0.004726 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.445577 B = 5923.795199 C = 6150.568676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.029 3.971 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.066 3.934 14 N -0.693 5.693 15 C 0.100 3.900 16 C -0.047 4.047 17 C 0.255 3.745 18 N -0.430 5.430 19 C -0.145 4.145 20 C -0.151 4.151 21 H 0.062 0.938 22 H 0.041 0.959 23 H 0.030 0.970 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.260 0.740 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.341 0.659 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 -2.137 18.768 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.062 4.062 14 N -0.325 5.325 15 C -0.031 4.031 16 C -0.051 4.051 17 C -0.063 4.063 18 N -0.105 5.105 19 C -0.184 4.184 20 C -0.190 4.190 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.159 0.841 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.233 -0.104 18.355 18.490 hybrid contribution -0.799 -0.696 -0.927 1.408 sum -3.032 -0.801 17.428 17.708 Atomic orbital electron populations 1.21737 0.96666 1.00416 1.00289 1.21229 0.94900 1.00150 0.94150 0.91694 1.19104 0.96131 0.95337 0.90301 1.21206 1.34722 1.08258 0.91017 0.92649 1.25006 0.95309 0.95082 0.99062 1.69951 1.39096 1.21203 1.23471 0.86694 0.78864 0.80183 0.82478 1.20276 1.21358 1.20306 1.22141 1.00490 0.94390 0.89201 1.60539 1.19935 1.50645 1.01339 1.21492 1.01279 0.93562 0.86719 1.18495 1.08281 0.83936 0.94373 1.27322 0.93253 0.92915 0.92810 1.81207 1.08580 1.12495 1.08189 1.23165 0.98054 1.03326 0.93823 1.23300 0.92358 1.02764 1.00559 0.91863 0.93942 0.95057 0.96648 0.96703 0.93050 0.91270 0.95485 0.84060 0.89752 0.93467 0.86787 0.87843 0.86904 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.77 37.16 0.33 -2.18 16 2 C -0.09 -1.75 2.54 -90.63 -0.23 -1.98 16 3 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.10 5.14 -3.83 -0.02 1.08 16 14 N -0.69 -9.82 5.68 -113.78 -0.65 -10.47 16 15 C 0.10 1.04 5.81 -3.83 -0.02 1.02 16 16 C -0.05 -0.43 2.39 -157.26 -0.38 -0.81 16 17 C 0.25 3.34 14.31 -20.76 -0.30 3.04 16 18 N -0.43 -6.92 18.54 42.15 0.78 -6.14 16 19 C -0.14 -0.86 9.93 -26.73 -0.27 -1.13 16 20 C -0.15 -0.95 9.86 -26.69 -0.26 -1.21 16 21 H 0.06 1.30 6.95 -51.93 -0.36 0.93 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.34 4.69 6.98 -39.29 -0.27 4.41 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.41 7.90 -51.93 -0.41 0.00 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.11 0.55 8.05 -51.93 -0.42 0.13 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -31.91 298.79 -6.85 -38.76 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.54 Total: -2.41 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.66 Total: -14.83 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.87 Total: -42.92 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.91 -6.85 -38.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602642339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.352 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds