Wall clock time and date at job start Sun Mar 29 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47128 * 2 1 4 4 C 1.52998 * 109.47126 * 240.00387 * 2 1 3 5 5 C 1.50707 * 109.47444 * 64.99658 * 4 2 1 6 6 H 1.07997 * 119.99394 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99932 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00569 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99785 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47224 * 60.00198 * 9 7 5 11 11 H 1.48504 * 109.47216 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47237 * 300.00067 * 9 7 5 13 13 C 1.52992 * 109.47291 * 120.00255 * 2 1 3 14 14 N 1.46903 * 109.47136 * 295.00040 * 13 2 1 15 15 C 1.46901 * 111.00099 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47117 * 180.02562 * 15 14 13 17 17 C 1.47206 * 115.54853 * 325.66515 * 16 15 14 18 18 N 5.33739 * 91.51058 * 58.63356 * 2 1 3 19 19 C 1.53000 * 117.49997 * 179.97438 * 16 15 14 20 20 C 1.53002 * 60.02940 * 252.49592 * 19 16 15 21 21 H 1.09003 * 109.47476 * 60.00069 * 1 2 3 22 22 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47284 * 300.00044 * 1 2 3 24 24 H 1.09004 * 109.47508 * 184.99926 * 4 2 1 25 25 H 1.09006 * 109.47008 * 304.99623 * 4 2 1 26 26 H 0.96994 * 119.99921 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.47215 * 175.00500 * 13 2 1 28 28 H 1.09002 * 109.47447 * 54.99906 * 13 2 1 29 29 H 1.00899 * 110.99889 * 56.04135 * 14 13 2 30 30 H 1.08996 * 109.47252 * 59.99499 * 15 14 13 31 31 H 1.08998 * 109.46758 * 299.99692 * 15 14 13 32 32 H 1.09002 * 117.49833 * 359.97438 * 19 16 15 33 33 H 1.09002 * 117.49953 * 144.99738 * 19 16 15 34 34 H 1.09000 * 117.49996 * 107.50493 * 20 19 16 35 35 H 1.08999 * 117.49664 * 252.51862 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4767 6 1 1.0806 0.9746 -2.3756 7 6 1.9923 -0.4021 -3.7284 8 7 2.6746 -1.5197 -3.8514 9 14 1.4986 0.5630 -5.2497 10 1 2.0918 1.9230 -5.1872 11 1 1.9936 -0.1370 -6.4622 12 1 0.0188 0.6707 -5.3090 13 6 2.0400 -0.7213 1.2491 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6266 3.6671 16 6 1.7024 0.1907 4.8892 17 6 1.6835 1.6506 4.7010 18 7 1.6707 2.7772 4.5558 19 6 2.1040 -0.3391 6.2671 20 6 0.6447 -0.4165 5.8141 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 3.1263 -0.7994 -1.2057 25 1 1.6054 -1.7198 -1.2952 26 1 2.9212 -1.8429 -4.7320 27 1 3.1264 -0.7994 1.2055 28 1 1.6054 -1.7198 1.2951 29 1 0.6528 0.1793 2.4752 30 1 3.2127 -0.7038 3.6399 31 1 1.6921 -1.6246 3.7299 32 1 2.6696 -1.2702 6.3031 33 1 2.3546 0.3933 7.0346 34 1 0.2504 -1.3983 5.5521 35 1 -0.0647 0.2653 6.2832 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602642339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:37 Heat of formation + Delta-G solvation = 13.347216 kcal Electronic energy + Delta-G solvation = -14517.105564 eV Core-core repulsion = 12128.456755 eV Total energy + Delta-G solvation = -2388.648809 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81644 -38.03326 -36.53815 -35.28186 -33.60575 -29.17105 -27.96303 -26.11114 -24.11532 -23.67027 -23.22877 -20.68700 -18.58657 -18.17923 -16.71517 -16.54728 -15.95920 -15.56284 -15.11425 -15.08032 -14.48388 -14.35571 -13.92519 -13.74764 -13.68830 -13.28201 -13.24230 -12.77574 -12.72483 -12.52276 -12.29247 -12.23131 -11.95743 -11.51573 -11.46162 -11.07069 -10.94819 -10.84190 -10.52733 -9.31717 -8.17651 -6.26392 1.39296 1.41770 1.49501 1.67739 1.87950 2.41659 2.91886 2.98917 3.15638 3.19511 3.82594 3.98612 4.10875 4.23745 4.26839 4.46364 4.69461 4.75486 4.81980 4.83877 4.88646 4.94578 5.05494 5.07524 5.24592 5.29037 5.37933 5.48440 5.55508 5.80572 5.89903 6.10164 6.32458 6.49459 6.71156 6.88989 7.41609 8.94030 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.052575 B = 0.004726 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.445577 B = 5923.795199 C = 6150.568676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 H 0.044 0.956 4 C 0.034 3.966 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.958 3.042 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.081 3.919 14 N -0.705 5.705 15 C 0.102 3.898 16 C -0.075 4.075 17 C 0.274 3.726 18 N -0.497 5.497 19 C -0.123 4.123 20 C -0.134 4.134 21 H 0.040 0.960 22 H 0.048 0.952 23 H 0.061 0.939 24 H -0.013 1.013 25 H -0.004 1.004 26 H 0.262 0.738 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.344 0.656 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 -2.842 20.156 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.098 4.098 3 H 0.063 0.937 4 C -0.003 4.003 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.783 3.217 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.192 1.192 13 C -0.048 4.048 14 N -0.338 5.338 15 C -0.028 4.028 16 C -0.079 4.079 17 C -0.042 4.042 18 N -0.173 5.173 19 C -0.162 4.162 20 C -0.172 4.172 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.006 0.994 25 H 0.014 0.986 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.163 0.837 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.125 0.875 34 H 0.152 0.848 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.160 -0.805 19.767 20.034 hybrid contribution -0.491 -0.518 -1.296 1.480 sum -3.651 -1.323 18.471 18.874 Atomic orbital electron populations 1.21629 0.95009 1.00944 1.00658 1.21034 0.96236 0.98609 0.93913 0.93725 1.18987 0.94253 0.94712 0.92363 1.21613 1.34626 1.08502 0.92332 0.92614 1.25891 0.95233 0.96074 1.02439 1.70076 1.40168 1.22764 1.24343 0.85613 0.78962 0.78714 0.78440 1.19699 1.20736 1.19194 1.21796 0.99775 0.94482 0.88733 1.60435 1.20270 1.51189 1.01867 1.21569 1.01352 0.94648 0.85232 1.18672 1.12329 0.81375 0.95569 1.28131 0.91275 0.93794 0.90991 1.81214 1.11161 1.14625 1.10294 1.23357 0.98136 1.03845 0.90853 1.23469 0.92404 1.03224 0.98072 0.94083 0.93271 0.92048 0.99449 0.98574 0.92877 0.92205 0.94427 0.83719 0.89932 0.90763 0.84378 0.87511 0.84760 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.77 71.98 0.63 -3.96 16 2 C -0.08 -3.27 2.54 -10.80 -0.03 -3.30 16 3 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 4 C 0.03 1.81 4.45 29.85 0.13 1.95 16 5 C -0.53 -30.65 8.41 25.60 0.22 -30.44 16 6 H 0.06 3.13 7.06 -2.91 -0.02 3.11 16 7 C 0.00 0.06 5.46 84.65 0.46 0.53 16 8 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 9 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 C 0.08 2.64 5.14 86.30 0.44 3.09 16 14 N -0.71 -18.90 5.68 -513.90 -2.92 -21.82 16 15 C 0.10 1.84 5.81 86.30 0.50 2.35 16 16 C -0.08 -1.18 2.39 -53.96 -0.13 -1.31 16 17 C 0.27 6.95 14.31 89.44 1.28 8.23 16 18 N -0.50 -16.14 18.54 20.01 0.37 -15.76 16 19 C -0.12 -1.00 9.93 30.60 0.30 -0.69 16 20 C -0.13 -1.15 9.86 30.62 0.30 -0.84 16 21 H 0.04 1.66 6.95 -2.39 -0.02 1.65 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.06 1.87 6.68 -2.39 -0.02 1.85 16 24 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 25 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 26 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.34 8.74 6.98 -89.69 -0.63 8.12 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 0.99 7.90 -2.39 -0.02 0.98 16 32 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.13 0.64 8.05 -2.39 -0.02 0.62 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -71.12 298.79 4.32 -66.80 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.44 Total: 4.88 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 4.12 Total: -24.41 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -2.26 Total: -94.43 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -71.12 4.32 -66.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602642339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.149 kcal (2) G-P(sol) polarization free energy of solvation -71.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds