Wall clock time and date at job start Sun Mar 29 2020 21:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47203 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.43197 * 179.97438 * 317.28394 * 3 2 1 5 5 O 1.21616 * 120.00297 * 345.81544 * 4 3 2 6 6 N 1.34776 * 119.99567 * 165.81884 * 4 3 2 7 7 C 1.46965 * 120.59323 * 179.97438 * 6 4 3 8 8 C 1.53374 * 108.63702 * 235.25034 * 7 6 4 9 9 N 1.46968 * 108.63080 * 310.57409 * 8 7 6 10 10 C 1.36934 * 120.58904 * 235.19759 * 9 8 7 11 11 H 1.08009 * 119.99376 * 151.84519 * 10 9 8 12 12 C 1.38804 * 120.00824 * 331.57781 * 10 9 8 13 13 N 1.31627 * 119.99593 * 342.82852 * 12 10 9 14 14 Si 1.86794 * 120.00637 * 162.82757 * 12 10 9 15 15 H 1.48504 * 109.47167 * 59.99793 * 14 12 10 16 16 H 1.48497 * 109.47420 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47203 * 300.00107 * 14 12 10 18 18 C 1.46960 * 118.80978 * 55.48071 * 9 8 7 19 19 C 1.46963 * 120.59877 * 0.02562 * 6 4 3 20 20 H 1.08997 * 109.47553 * 56.89879 * 1 2 3 21 21 H 1.09001 * 109.46783 * 176.89962 * 1 2 3 22 22 H 1.09000 * 109.47357 * 296.89249 * 1 2 3 23 23 H 1.08996 * 109.61476 * 115.50253 * 7 6 4 24 24 H 1.09010 * 109.75120 * 355.07348 * 7 6 4 25 25 H 1.09003 * 109.60871 * 190.82753 * 8 7 6 26 26 H 1.08999 * 109.74926 * 70.40483 * 8 7 6 27 27 H 0.97003 * 120.00012 * 180.02562 * 13 12 10 28 28 H 1.08998 * 109.61464 * 64.26783 * 18 9 8 29 29 H 1.09004 * 109.60410 * 184.77119 * 18 9 8 30 30 H 1.08997 * 109.60925 * 244.49552 * 19 6 4 31 31 H 1.09004 * 109.60691 * 4.83230 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0007 0.0004 5 8 4.6862 -1.0203 0.2587 6 7 4.7518 1.1324 -0.2853 7 6 6.2213 1.1476 -0.2881 8 6 6.7019 2.2485 0.6655 9 7 5.9802 3.4897 0.3516 10 6 6.6648 4.6397 0.0622 11 1 6.2211 5.3849 -0.5815 12 6 7.9267 4.8505 0.6006 13 7 8.3289 4.1396 1.6328 14 14 9.0542 6.1428 -0.1396 15 1 8.4021 7.4745 -0.0572 16 1 10.3346 6.1719 0.6120 17 1 9.3220 5.8101 -1.5618 18 6 4.5107 3.4759 0.3598 19 6 4.0301 2.3738 -0.5986 20 1 -0.3634 0.5612 -0.8608 21 1 -0.3633 -1.0262 -0.0556 22 1 -0.3634 0.4648 0.9165 23 1 6.5832 1.3527 -1.2955 24 1 6.6003 0.1821 0.0473 25 1 7.7727 2.4046 0.5340 26 1 6.4985 1.9577 1.6961 27 1 9.2107 4.2871 2.0093 28 1 4.1524 3.2689 1.3682 29 1 4.1339 4.4429 0.0265 30 1 4.2356 2.6664 -1.6283 31 1 2.9592 2.2168 -0.4697 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606263571.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:54 Heat of formation + Delta-G solvation = 45.625279 kcal Electronic energy + Delta-G solvation = -14947.963278 eV Core-core repulsion = 12424.881057 eV Total energy + Delta-G solvation = -2523.082222 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.55590 -36.80134 -34.31075 -33.78759 -31.21553 -30.50808 -28.83762 -26.92514 -24.02264 -23.03928 -21.83818 -19.57938 -17.83662 -16.51884 -15.80957 -14.97905 -14.97534 -14.74728 -13.85176 -13.76028 -13.70460 -13.48896 -13.35998 -13.27697 -12.47046 -11.79047 -11.28486 -10.84673 -10.77467 -10.61472 -10.36542 -10.24006 -10.22657 -10.02019 -9.88150 -9.68109 -8.61239 -8.30809 -6.73924 -5.86383 -3.32065 1.78523 2.42966 3.34046 3.34653 3.41110 3.42065 3.79088 4.26947 4.44084 5.23284 5.30671 5.31281 5.33297 5.36349 5.57096 5.71777 5.74689 5.90271 6.11157 6.29922 6.35511 6.46454 6.67100 6.82843 7.21294 7.35294 7.51849 7.70507 7.79185 8.34459 8.43780 9.10084 9.72662 10.29689 11.21236 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.050711 B = 0.006746 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.013483 B = 4149.621327 C = 4489.319398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.109 4.109 3 C -0.206 4.206 4 C 0.620 3.380 5 O -0.542 6.542 6 N -0.583 5.583 7 C 0.088 3.912 8 C 0.157 3.843 9 N -0.591 5.591 10 C -0.260 4.260 11 H 0.068 0.932 12 C 0.005 3.995 13 N -0.901 5.901 14 Si 0.906 3.094 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.132 3.868 19 C 0.090 3.910 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.025 0.975 27 H 0.257 0.743 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.946 -4.109 -4.325 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.112 4.112 3 C -0.209 4.209 4 C 0.408 3.592 5 O -0.422 6.422 6 N -0.314 5.314 7 C -0.035 4.035 8 C 0.031 3.969 9 N -0.314 5.314 10 C -0.389 4.389 11 H 0.085 0.915 12 C -0.194 4.194 13 N -0.545 5.545 14 Si 0.735 3.265 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.209 1.209 18 C 0.004 3.996 19 C -0.035 4.035 20 H 0.106 0.894 21 H 0.104 0.896 22 H 0.108 0.892 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.120 0.880 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.403 -4.579 -4.095 12.953 hybrid contribution 0.566 0.726 -0.283 0.963 sum -10.837 -3.853 -4.378 12.307 Atomic orbital electron populations 1.19041 0.83718 1.03666 1.03806 1.22612 0.93796 0.99259 0.95532 1.20896 0.92713 1.02455 1.04869 1.14876 0.82511 0.83745 0.78042 1.90797 1.68676 1.32350 1.50397 1.47956 1.08170 1.08881 1.66405 1.22613 0.77002 1.02057 1.01827 1.21224 0.99003 0.82977 0.93711 1.44021 0.98950 1.06943 1.81476 1.19152 0.99328 0.97331 1.23103 0.91456 1.25095 0.99913 0.98649 0.95769 1.70014 1.19803 1.43003 1.21644 0.86324 0.80118 0.81279 0.78750 1.20820 1.21558 1.20895 1.21356 0.86860 0.95729 0.95642 1.22487 0.95264 0.85172 1.00576 0.89356 0.89610 0.89229 0.91673 0.89777 0.87982 0.95659 0.93331 0.95785 0.91303 0.91290 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.35 10.32 34.37 0.35 0.01 16 2 C -0.11 -1.44 14.07 -37.12 -0.52 -1.96 16 3 C -0.21 -3.46 11.57 -38.84 -0.45 -3.91 16 4 C 0.62 12.31 7.55 -14.34 -0.11 12.20 16 5 O -0.54 -12.27 16.49 5.26 0.09 -12.19 16 6 N -0.58 -11.38 2.95 -175.12 -0.52 -11.89 16 7 C 0.09 1.81 6.59 -3.60 -0.02 1.79 16 8 C 0.16 3.78 5.51 -3.59 -0.02 3.76 16 9 N -0.59 -14.54 2.96 -171.80 -0.51 -15.05 16 10 C -0.26 -6.91 9.57 -15.06 -0.14 -7.05 16 11 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 12 C 0.00 0.13 4.91 -17.43 -0.09 0.05 16 13 N -0.90 -25.71 11.20 55.49 0.62 -25.09 16 14 Si 0.91 21.13 29.59 -169.99 -5.03 16.10 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.13 2.67 6.70 -3.40 -0.02 2.65 16 19 C 0.09 1.56 6.50 -3.39 -0.02 1.54 16 20 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.08 1.71 7.00 -51.92 -0.36 1.35 16 25 H 0.10 2.67 6.00 -51.93 -0.31 2.36 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.09 6.30 -51.93 -0.33 0.76 16 LS Contribution 268.22 15.07 4.04 4.04 Total: -1.00 -31.74 268.22 -6.27 -38.01 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -3.92 Total: -3.00 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.04 Total: 9.06 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.40 Total: -52.03 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.74 -6.27 -38.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606263571.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.635 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds