Wall clock time and date at job start Sun Mar 29 2020 22:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28712 * 125.86701 * 2 1 4 4 N 1.28634 * 110.17601 * 180.02562 * 3 2 1 5 5 C 1.33775 * 108.88675 * 359.76377 * 4 3 2 6 6 C 1.35319 * 125.86870 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.90843 * 359.94084 * 6 2 1 8 8 N 1.46494 * 109.47313 * 275.00195 * 7 6 2 9 9 C 1.36930 * 120.00175 * 90.00544 * 8 7 6 10 10 H 1.08005 * 120.00316 * 216.78230 * 9 8 7 11 11 C 1.38811 * 120.00242 * 36.77796 * 9 8 7 12 12 N 1.31621 * 119.99690 * 19.83538 * 11 9 8 13 13 Si 1.86797 * 120.00444 * 199.83513 * 11 9 8 14 14 H 1.48502 * 109.46887 * 269.99990 * 13 11 9 15 15 H 1.48500 * 109.47191 * 29.99932 * 13 11 9 16 16 H 1.48494 * 109.47399 * 150.00082 * 13 11 9 17 17 C 1.46505 * 119.99997 * 270.00017 * 8 7 6 18 18 C 1.52996 * 117.49852 * 193.91932 * 17 8 7 19 19 C 1.53004 * 60.00258 * 252.51329 * 18 17 8 20 20 H 1.08995 * 109.47333 * 269.97662 * 1 2 3 21 21 H 1.09001 * 109.47179 * 29.97872 * 1 2 3 22 22 H 1.09002 * 109.46952 * 149.97233 * 1 2 3 23 23 H 1.08001 * 126.74818 * 180.23385 * 5 4 3 24 24 H 1.09004 * 109.46762 * 155.00249 * 7 6 2 25 25 H 1.09003 * 109.47436 * 35.00544 * 7 6 2 26 26 H 0.97006 * 120.00006 * 174.75367 * 12 11 9 27 27 H 1.08994 * 115.55136 * 339.63194 * 17 8 7 28 28 H 1.08996 * 117.49945 * 359.97438 * 18 17 8 29 29 H 1.08997 * 117.50164 * 145.02447 * 18 17 8 30 30 H 1.09001 * 117.49772 * 252.51405 * 19 18 17 31 31 H 1.08997 * 117.49970 * 107.48484 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0431 0.0000 4 7 3.4575 0.6952 -0.0005 5 6 3.5321 -0.6405 0.0043 6 6 2.2578 -1.0966 -0.0005 7 6 1.8116 -2.5360 0.0001 8 7 1.5532 -2.9666 1.3763 9 6 0.3039 -2.8182 1.9169 10 1 0.1941 -2.5516 2.9578 11 6 -0.8215 -3.0103 1.1273 12 7 -0.7304 -3.6960 0.0075 13 14 -2.4651 -2.2957 1.6538 14 1 -3.1894 -3.2851 2.4916 15 1 -2.2372 -1.0554 2.4380 16 1 -3.2753 -1.9786 0.4505 17 6 2.6313 -3.5561 2.1741 18 6 2.2409 -4.2783 3.4652 19 6 2.9369 -2.9172 3.5304 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5143 23 1 4.4321 -1.2374 0.0087 24 1 2.5934 -3.1589 -0.4347 25 1 0.8995 -2.6340 -0.5886 26 1 -1.5292 -3.8955 -0.5054 27 1 3.4706 -3.9578 1.6064 28 1 1.1821 -4.3144 3.7213 29 1 2.8234 -5.1554 3.7471 30 1 3.9773 -2.8990 3.8551 31 1 2.3359 -2.0584 3.8289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611264913.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:10 Heat of formation + Delta-G solvation = 132.139221 kcal Electronic energy + Delta-G solvation = -15720.189823 eV Core-core repulsion = 13233.151879 eV Total energy + Delta-G solvation = -2487.037944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.99892 -38.79764 -35.87359 -35.03266 -33.42875 -31.33173 -28.81030 -27.51626 -25.50406 -23.27650 -22.94172 -21.96216 -21.36876 -18.60066 -17.86203 -17.35377 -17.22649 -16.19914 -15.81104 -15.37161 -14.92721 -14.50471 -14.15229 -13.78716 -13.64070 -13.01731 -12.95793 -12.70252 -12.49074 -12.37727 -12.19160 -11.96720 -11.63633 -11.45164 -10.99172 -10.86475 -10.49064 -9.93483 -8.50163 -7.92172 -5.50051 0.80647 1.37463 1.47442 1.51682 1.68686 1.74191 2.42832 3.10335 3.41898 3.53902 3.70864 3.92804 4.23443 4.28799 4.32582 4.37292 4.51320 4.55654 4.58152 4.80112 4.95455 5.04518 5.14471 5.34188 5.40148 5.53178 5.54443 5.68690 5.83891 6.42284 7.08346 7.65906 7.74666 8.27574 9.06553 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.015095 C = 0.010318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.620895 B = 1854.423504 C = 2712.963068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.281 5.281 3 N -0.136 5.136 4 N -0.302 5.302 5 C -0.070 4.070 6 C -0.001 4.001 7 C 0.207 3.793 8 N -0.554 5.554 9 C -0.263 4.263 10 H 0.044 0.956 11 C -0.007 4.007 12 N -0.906 5.906 13 Si 0.924 3.076 14 H -0.290 1.290 15 H -0.271 1.271 16 H -0.274 1.274 17 C 0.108 3.892 18 C -0.188 4.188 19 C -0.212 4.212 20 H 0.080 0.920 21 H 0.115 0.885 22 H 0.097 0.903 23 H 0.207 0.793 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.260 0.740 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 0.625 -0.145 2.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.074 5.074 3 N -0.115 5.115 4 N -0.168 5.168 5 C -0.228 4.228 6 C -0.137 4.137 7 C 0.079 3.921 8 N -0.270 5.270 9 C -0.393 4.393 10 H 0.062 0.938 11 C -0.205 4.205 12 N -0.549 5.549 13 Si 0.751 3.249 14 H -0.217 1.217 15 H -0.196 1.196 16 H -0.199 1.199 17 C 0.000 4.000 18 C -0.227 4.227 19 C -0.252 4.252 20 H 0.099 0.901 21 H 0.133 0.867 22 H 0.115 0.885 23 H 0.224 0.776 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.135 0.865 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.572 2.200 -0.342 3.402 hybrid contribution -1.305 -0.844 0.588 1.661 sum 1.267 1.357 0.247 1.873 Atomic orbital electron populations 1.22310 0.72402 1.05850 1.04837 1.47183 1.09725 1.04561 1.45961 1.78054 0.96925 1.13148 1.23409 1.74851 1.10095 1.13937 1.17895 1.23656 0.98112 0.91314 1.09737 1.24110 0.91022 0.94436 1.04150 1.19586 1.01945 0.82985 0.87599 1.43446 1.05961 1.66600 1.11006 1.18899 0.83047 1.41949 0.95369 0.93783 1.25489 0.99419 0.98049 0.97571 1.69902 1.28913 1.38859 1.17194 0.86006 0.81642 0.79134 0.78098 1.21743 1.19633 1.19883 1.21465 0.93403 0.98705 0.86399 1.23060 1.00259 0.95249 1.04129 1.23245 1.00252 0.95537 1.06210 0.90124 0.86705 0.88467 0.77577 0.90328 0.88641 0.92974 0.86538 0.90994 0.87733 0.87972 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.04 10.66 127.77 1.36 4.41 16 2 N -0.28 -11.20 3.74 -355.74 -1.33 -12.53 16 3 N -0.14 -5.70 13.16 37.02 0.49 -5.22 16 4 N -0.30 -12.47 12.41 -58.26 -0.72 -13.19 16 5 C -0.07 -2.58 11.99 83.73 1.00 -1.57 16 6 C 0.00 -0.03 6.58 41.35 0.27 0.24 16 7 C 0.21 8.41 5.55 85.63 0.48 8.89 16 8 N -0.55 -24.14 2.78 -682.34 -1.89 -26.03 16 9 C -0.26 -12.58 8.10 84.03 0.68 -11.90 16 10 H 0.04 2.26 7.16 -2.91 -0.02 2.24 16 11 C -0.01 -0.31 3.96 84.86 0.34 0.03 16 12 N -0.91 -44.47 11.31 21.65 0.24 -44.23 16 13 Si 0.92 38.32 28.78 68.60 1.97 40.29 16 14 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 17 C 0.11 4.10 6.61 44.99 0.30 4.40 16 18 C -0.19 -6.79 9.80 30.59 0.30 -6.49 16 19 C -0.21 -7.56 10.08 30.60 0.31 -7.25 16 20 H 0.08 2.95 7.55 -2.39 -0.02 2.93 16 21 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 22 H 0.10 3.56 6.48 -2.39 -0.02 3.55 16 23 H 0.21 6.09 8.06 -2.91 -0.02 6.06 16 24 H 0.08 2.86 8.04 -2.39 -0.02 2.84 16 25 H 0.10 4.31 4.56 -2.39 -0.01 4.30 16 26 H 0.26 12.42 8.32 -92.70 -0.77 11.65 16 27 H 0.12 3.81 8.10 -2.39 -0.02 3.79 16 28 H 0.07 2.99 6.92 -2.39 -0.02 2.97 16 29 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.05 2.27 8.01 -2.39 -0.02 2.25 16 Total: -1.00 -55.47 264.48 4.92 -50.55 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 1.13 Total: 19.62 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.04 Total: -9.26 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -3.22 Total: -101.20 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.97 Total: 40.29 kcal Total: -55.47 4.92 -50.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611264913.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.690 kcal (2) G-P(sol) polarization free energy of solvation -55.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds