Wall clock time and date at job start Sun Mar 29 2020 22:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36444 * 124.85346 * 2 1 4 4 C 1.34483 * 108.85967 * 179.97438 * 3 2 1 5 5 C 1.46683 * 106.33071 * 0.02562 * 4 3 2 6 6 C 1.47269 * 126.94164 * 179.97438 * 5 4 3 7 7 O 1.21633 * 120.00004 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00021 * 0.02910 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27620 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00490 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00172 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99620 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46847 * 90.00413 * 15 13 11 17 17 H 1.48502 * 109.46888 * 210.00098 * 15 13 11 18 18 H 1.48496 * 109.47530 * 329.99981 * 15 13 11 19 19 C 1.34659 * 124.85049 * 180.26581 * 2 1 3 20 20 H 1.08998 * 109.47145 * 90.02272 * 1 2 3 21 21 H 1.08997 * 109.47047 * 210.02388 * 1 2 3 22 22 H 1.09007 * 109.46958 * 330.02235 * 1 2 3 23 23 H 1.08001 * 125.56929 * 359.96310 * 3 2 1 24 24 H 1.08000 * 126.83712 * 180.02562 * 4 3 2 25 25 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 26 26 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 27 27 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 28 28 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 29 29 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 30 30 H 0.96998 * 120.00373 * 180.02562 * 14 13 11 31 31 H 1.08004 * 125.80516 * 0.06066 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5462 -0.7177 0.0003 6 6 4.7284 -1.5958 0.0002 7 8 4.5885 -2.8041 -0.0005 8 7 5.9653 -1.0607 0.0010 9 6 7.1414 -1.9342 -0.0053 10 6 8.4109 -1.0804 -0.0099 11 6 9.6207 -1.9789 -0.0157 12 1 9.4965 -3.0518 -0.0156 13 6 10.8861 -1.4315 -0.0211 14 7 11.9418 -2.2157 -0.0267 15 14 11.1009 0.4241 -0.0221 16 1 11.1639 0.9158 1.3777 17 1 12.3593 0.7764 -0.7276 18 1 9.9504 1.0553 -0.7172 19 6 2.2345 -1.1051 -0.0051 20 1 -0.3633 -0.0004 -1.0276 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3633 0.8903 0.5135 23 1 1.8829 2.1373 -0.0006 24 1 4.3981 1.4016 0.0011 25 1 6.0769 -0.0971 0.0012 26 1 7.1306 -2.5644 0.8841 27 1 7.1227 -2.5624 -0.8958 28 1 8.4217 -0.4503 -0.8993 29 1 8.4296 -0.4522 0.8806 30 1 12.8320 -1.8306 -0.0301 31 1 1.8767 -2.1241 -0.0108 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612060914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:49 Heat of formation + Delta-G solvation = 4.523632 kcal Electronic energy + Delta-G solvation = -14194.857228 eV Core-core repulsion = 11669.992705 eV Total energy + Delta-G solvation = -2524.864523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.22714 -38.62687 -34.78907 -33.03594 -32.55268 -30.08896 -29.15415 -26.92092 -24.77058 -22.19751 -20.76011 -20.11859 -19.31906 -17.81039 -16.79723 -15.58158 -15.53825 -14.99490 -14.65323 -14.15668 -14.10761 -13.19467 -13.16116 -13.09273 -12.68593 -12.52149 -12.39694 -12.03915 -11.39866 -11.12699 -10.30057 -10.16415 -9.89533 -9.42701 -9.21319 -8.71563 -8.56874 -8.47635 -8.20951 -6.05097 -4.04555 1.89282 2.39498 2.69618 3.30425 3.37694 3.39863 3.93102 3.96346 4.43658 4.46342 4.79283 4.79636 4.92951 5.04361 5.28103 5.38266 5.45604 5.86056 6.03072 6.28235 6.33120 6.66962 6.70352 6.93756 6.96053 7.11905 7.27598 7.33479 7.74453 8.16159 8.51399 8.83299 8.99982 9.55454 11.08088 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.056055 B = 0.005049 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.388955 B = 5544.147690 C = 6017.775556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.451 5.451 3 C -0.022 4.022 4 C -0.168 4.168 5 C -0.226 4.226 6 C 0.582 3.418 7 O -0.562 6.562 8 N -0.721 5.721 9 C 0.131 3.869 10 C -0.022 4.022 11 C -0.521 4.521 12 H 0.076 0.924 13 C 0.068 3.932 14 N -0.900 5.900 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.067 3.933 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.165 0.835 24 H 0.146 0.854 25 H 0.395 0.605 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.264 0.736 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.636 9.366 0.076 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.128 5.128 3 C -0.149 4.149 4 C -0.193 4.193 5 C -0.236 4.236 6 C 0.370 3.630 7 O -0.442 6.442 8 N -0.370 5.370 9 C 0.009 3.991 10 C -0.060 4.060 11 C -0.559 4.559 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.539 5.539 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.068 4.068 20 H 0.092 0.908 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.182 0.818 24 H 0.164 0.836 25 H 0.229 0.771 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -22.862 8.523 0.076 24.399 hybrid contribution 0.326 1.493 0.005 1.528 sum -22.536 10.016 0.081 24.661 Atomic orbital electron populations 1.22083 0.77136 1.04514 1.03395 1.43592 1.06613 1.05978 1.56582 1.21701 0.90607 0.91166 1.11382 1.22101 0.96196 0.93441 1.07521 1.20548 0.92859 0.93400 1.16782 1.17396 0.82573 0.86994 0.76076 1.90743 1.86767 1.14764 1.51940 1.46093 1.05985 1.10636 1.74332 1.21470 0.83059 0.93063 1.01518 1.19795 0.93011 0.96410 0.96807 1.20949 0.88780 0.94850 1.51341 0.90617 1.25001 0.95840 0.98059 0.94438 1.69905 0.98148 1.35123 1.50701 0.86748 0.77698 0.86144 0.78481 1.20241 1.21335 1.19027 1.21776 0.89886 0.91641 1.03456 0.90799 0.89676 0.89737 0.81770 0.83634 0.77124 0.92051 0.92037 0.96003 0.96435 0.92619 0.80898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.03 59.85 0.66 1.01 16 2 N -0.45 -4.33 3.09 -124.53 -0.38 -4.72 16 3 C -0.02 -0.22 11.34 -16.83 -0.19 -0.41 16 4 C -0.17 -2.05 10.56 -37.50 -0.40 -2.44 16 5 C -0.23 -3.41 6.29 -103.35 -0.65 -4.06 16 6 C 0.58 10.97 7.81 -12.59 -0.10 10.87 16 7 O -0.56 -12.49 16.91 5.25 0.09 -12.41 16 8 N -0.72 -13.36 5.55 -61.43 -0.34 -13.70 16 9 C 0.13 2.87 5.61 -4.04 -0.02 2.85 16 10 C -0.02 -0.54 4.16 -27.89 -0.12 -0.65 16 11 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 12 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 15 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 19 C 0.07 0.84 11.12 -16.84 -0.19 0.65 16 20 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 21 H 0.08 0.33 8.13 -51.93 -0.42 -0.10 16 22 H 0.08 0.27 8.13 -51.92 -0.42 -0.15 16 23 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 24 H 0.15 1.54 7.70 -52.49 -0.40 1.13 16 25 H 0.40 6.27 7.60 -40.82 -0.31 5.96 16 26 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 29 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.17 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 273.94 15.07 4.13 4.13 Total: -1.00 -35.07 273.94 -5.86 -40.93 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.03 Total: 1.67 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.43 Total: -5.62 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.05 Total: -45.53 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -35.07 -5.86 -40.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612060914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.458 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds